Detailed information of component protein


Summary

Component ID T6CP015302
Component protein type PAAR
T6SS ID (Type) T6SS01207 experimental (Type iv)
Strain Candidatus Amoebophilus asiaticus 5a2
Replicon chromosome
Sequence Protein sequence (103 a.a.); Nucleotide sequence (309 bp)
Reference
-
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AASI_RS05525
Coordinate (Strand) 1393671..1393979 (+)
NCBI ID WP_012473184.1
RefSeq NC_010830
Uniprot ID B3ET74_AMOA5
KEGG ID aas:Aasi_1081
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 1.3e-20 26..92
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-102 MPGAATITHKHICPLVTPGLPPIPHAAGGVIIKGCPTVMINGLPAARVTDMLQCAGPPPHPDTIVMGSTTVLIGGLPAARMGSLTAVGGTVQMGSPTVMIGG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6224 - -


  Protein sequence: 103 a.a.    

>T6CP015302 NC_010830:1393671-1393979 [Candidatus Amoebophilus asiaticus 5a2] [PAAR]
MPGAATITHKHICPLVTPGLPPIPHAAGGVIIKGCPTVMINGLPAARVTDMLQCAGPPPHPDTIVMGSTTVLIGGLPAAR
MGSLTAVGGTVQMGSPTVMIGG*

  Nucleotide sequence: 309 bp    

>T6CP015302 NC_010830:1393671-1393979 [Candidatus Amoebophilus asiaticus 5a2] [PAAR]
ATGCCTGGTGCAGCTACAATTACTCATAAGCATATATGTCCACTAGTTACACCTGGGCTCCCTCCTATACCTCATGCAGC
AGGTGGTGTCATCATTAAAGGATGTCCTACTGTTATGATCAATGGGTTACCTGCCGCACGGGTTACAGATATGCTGCAAT
GTGCAGGTCCTCCACCCCATCCAGATACCATCGTAATGGGTTCTACAACAGTGCTTATAGGAGGGTTACCAGCAGCCAGA
ATGGGTAGCCTTACAGCCGTAGGCGGAACAGTACAAATGGGGTCTCCAACCGTAATGATAGGTGGCTAA