Detailed information of component protein


Summary

Component ID T6CP015299
Component protein type T6SSiv-Afp-like
T6SS ID (Type) T6SS01207 experimental (Type iv)
Strain Candidatus Amoebophilus asiaticus 5a2
Replicon chromosome
Sequence Protein sequence (60 a.a.); Nucleotide sequence (180 bp)
Reference
-
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AASI_RS05510
Coordinate (Strand) 1389623..1389802 (+)
NCBI ID WP_012473181.1
RefSeq NC_010830
Uniprot ID B3ET71_AMOA5
KEGG ID aas:Aasi_1078
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF5908 PF19265.1 7.1e-18 1..59
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-59 MPVKIQELVIQTRIKPDNGSADKSTSAKAMQQDLIKLEKRLEYNCLQAMKTLLSQKQER


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9877 - -


  Protein sequence: 60 a.a.    

>T6CP015299 NC_010830:1389623-1389802 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-Afp-like ]
MPVKIQELVIQTRIKPDNGSADKSTSAKAMQQDLIKLEKRLEYNCLQAMKTLLSQKQER*

  Nucleotide sequence: 180 bp    

>T6CP015299 NC_010830:1389623-1389802 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-Afp-like ]
ATGCCTGTTAAAATACAAGAATTAGTTATACAGACTAGAATAAAGCCTGACAATGGTTCTGCAGATAAGTCAACATCTGC
TAAAGCTATGCAGCAAGATTTAATAAAACTTGAAAAGCGGCTAGAGTATAACTGTTTGCAAGCTATGAAAACTTTATTAA
GCCAGAAACAAGAACGTTAA