Detailed information of component protein
Summary
| Component ID | T6CP015298 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01207  (Type iv) |
| Strain | Candidatus Amoebophilus asiaticus 5a2 |
| Replicon | chromosome |
| Sequence | Protein sequence (155 a.a.); Nucleotide sequence (465 bp) |
| Reference | - |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AASI_RS05505 |
| Coordinate (Strand) | 1389108..1389572 (+) |
| NCBI ID | WP_012473180.1 |
| RefSeq | NC_010830 |
| Uniprot ID | B3ET70_AMOA5 |
| KEGG ID | aas:Aasi_1077 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Phage_T4_gp19 | PF06841.14 | 5e-17 | 11..144 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-154 | MGTLIPTLKHSFRVTLENVVDANDPEYFYAIEGLGMMYQIDKYCPGGYGNAYSMPTIYEVENLILKRPVFTTKSKINKWCEQALSSGIFAPTIAHIFILNNDETLNNHWTVEGVYPIGFRLSSLDLESGSPIVIETITLAYSKLTRLDVNPTTS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9829 | - | - |
Protein sequence: 155 a.a.
>T6CP015298 NC_010830:1389108-1389572 [Candidatus Amoebophilus asiaticus 5a2] [TssD]
MGTLIPTLKHSFRVTLENVVDANDPEYFYAIEGLGMMYQIDKYCPGGYGNAYSMPTIYEVENLILKRPVFTTKSKINKWC
EQALSSGIFAPTIAHIFILNNDETLNNHWTVEGVYPIGFRLSSLDLESGSPIVIETITLAYSKLTRLDVNPTTS*
MGTLIPTLKHSFRVTLENVVDANDPEYFYAIEGLGMMYQIDKYCPGGYGNAYSMPTIYEVENLILKRPVFTTKSKINKWC
EQALSSGIFAPTIAHIFILNNDETLNNHWTVEGVYPIGFRLSSLDLESGSPIVIETITLAYSKLTRLDVNPTTS*
Nucleotide sequence: 465 bp
>T6CP015298 NC_010830:1389108-1389572 [Candidatus Amoebophilus asiaticus 5a2] [TssD]
ATGGGCACACTTATTCCCACGCTTAAACATTCTTTTCGAGTAACCTTAGAAAACGTAGTGGATGCAAATGATCCAGAATA
TTTTTATGCTATAGAAGGTTTAGGAATGATGTATCAAATAGATAAATATTGCCCAGGAGGATATGGGAATGCTTATAGTA
TGCCTACAATATATGAAGTAGAAAATTTGATATTAAAAAGGCCTGTTTTTACAACAAAGTCTAAGATTAATAAATGGTGC
GAGCAGGCTTTATCTAGTGGCATTTTTGCACCTACTATAGCACACATATTTATATTAAACAATGATGAAACACTTAATAA
CCATTGGACAGTAGAGGGGGTTTATCCTATAGGATTTAGACTTTCATCCTTAGATTTAGAGTCAGGAAGCCCAATAGTAA
TAGAAACTATTACCTTAGCTTATTCAAAACTTACTCGGCTCGATGTTAATCCAACTACCTCATAA
ATGGGCACACTTATTCCCACGCTTAAACATTCTTTTCGAGTAACCTTAGAAAACGTAGTGGATGCAAATGATCCAGAATA
TTTTTATGCTATAGAAGGTTTAGGAATGATGTATCAAATAGATAAATATTGCCCAGGAGGATATGGGAATGCTTATAGTA
TGCCTACAATATATGAAGTAGAAAATTTGATATTAAAAAGGCCTGTTTTTACAACAAAGTCTAAGATTAATAAATGGTGC
GAGCAGGCTTTATCTAGTGGCATTTTTGCACCTACTATAGCACACATATTTATATTAAACAATGATGAAACACTTAATAA
CCATTGGACAGTAGAGGGGGTTTATCCTATAGGATTTAGACTTTCATCCTTAGATTTAGAGTCAGGAAGCCCAATAGTAA
TAGAAACTATTACCTTAGCTTATTCAAAACTTACTCGGCTCGATGTTAATCCAACTACCTCATAA