Detailed information of component protein
Summary
Component ID | T6CP015295 |
Component protein type | TssB/TssC |
T6SS ID (Type) | T6SS01207 (Type iv) |
Strain | Candidatus Amoebophilus asiaticus 5a2 |
Replicon | chromosome |
Sequence | Protein sequence (499 a.a.); Nucleotide sequence (1497 bp) |
Reference | - |
External database links
Locus tag (Gene) | AASI_RS05490 |
Coordinate (Strand) | 1386461..1387957 (+) |
NCBI ID | WP_012473177.1 |
RefSeq | NC_010830 |
Uniprot ID | B3ET67_AMOA5 |
KEGG ID | aas:Aasi_1074 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
Phage_sheath_1 | PF04984.16 | 1.7e-08 | 280..380 |
Phage_sheath_1C | PF17482.4 | 2.3e-08 | 386..490 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-498 | MPENLKTPGVYIVEKDTGANAVVQVATAVPVFIGFTERAEINGKSFHMKPVHINSLSEFEIFYGKAPVPVFTVKPAEKGGGDLNMNGQMYTLQQSPYSKFYLYNSLKLFFDNGGADCYIISIGQYGKDPQLLAITPDTFKKAIDTLAGEEVPTMLLMPDSLLLDEEDSSYYSVQTYALQHCGKYMDKVALFDIWGSGEELPLGEDKNKYVTRFRENIGLDNLTYGAAYYPWVKTNIISINDIGYENFNLDSLESLINEAHKPILHNIKTATSEKEKKYWDAGLKNASKEYKLLRKTIADRLNVLPAAPAMAGLYTRTDRSRGVWIAPANQNLNSVIEPAIKITHEDQETLNVDAISGKSINAIRAFRGRGSAIVWGARTLAGNNVEWRYINVRRLFILIEQSIKQASFSVVFQPNVSITWAIVKGSIGNFLTNLWRQGALVGNTPSEAFTVSCGLGETMTQEDINEGIMRIKVQAAASRPAEFIVITFEQKMGGQEGS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9854 | - | - |
Protein sequence: 499 a.a.
>T6CP015295 NC_010830:1386461-1387957 [Candidatus Amoebophilus asiaticus 5a2] [TssB/TssC]
MPENLKTPGVYIVEKDTGANAVVQVATAVPVFIGFTERAEINGKSFHMKPVHINSLSEFEIFYGKAPVPVFTVKPAEKGG
GDLNMNGQMYTLQQSPYSKFYLYNSLKLFFDNGGADCYIISIGQYGKDPQLLAITPDTFKKAIDTLAGEEVPTMLLMPDS
LLLDEEDSSYYSVQTYALQHCGKYMDKVALFDIWGSGEELPLGEDKNKYVTRFRENIGLDNLTYGAAYYPWVKTNIISIN
DIGYENFNLDSLESLINEAHKPILHNIKTATSEKEKKYWDAGLKNASKEYKLLRKTIADRLNVLPAAPAMAGLYTRTDRS
RGVWIAPANQNLNSVIEPAIKITHEDQETLNVDAISGKSINAIRAFRGRGSAIVWGARTLAGNNVEWRYINVRRLFILIE
QSIKQASFSVVFQPNVSITWAIVKGSIGNFLTNLWRQGALVGNTPSEAFTVSCGLGETMTQEDINEGIMRIKVQAAASRP
AEFIVITFEQKMGGQEGS*
MPENLKTPGVYIVEKDTGANAVVQVATAVPVFIGFTERAEINGKSFHMKPVHINSLSEFEIFYGKAPVPVFTVKPAEKGG
GDLNMNGQMYTLQQSPYSKFYLYNSLKLFFDNGGADCYIISIGQYGKDPQLLAITPDTFKKAIDTLAGEEVPTMLLMPDS
LLLDEEDSSYYSVQTYALQHCGKYMDKVALFDIWGSGEELPLGEDKNKYVTRFRENIGLDNLTYGAAYYPWVKTNIISIN
DIGYENFNLDSLESLINEAHKPILHNIKTATSEKEKKYWDAGLKNASKEYKLLRKTIADRLNVLPAAPAMAGLYTRTDRS
RGVWIAPANQNLNSVIEPAIKITHEDQETLNVDAISGKSINAIRAFRGRGSAIVWGARTLAGNNVEWRYINVRRLFILIE
QSIKQASFSVVFQPNVSITWAIVKGSIGNFLTNLWRQGALVGNTPSEAFTVSCGLGETMTQEDINEGIMRIKVQAAASRP
AEFIVITFEQKMGGQEGS*
Nucleotide sequence: 1497 bp
>T6CP015295 NC_010830:1386461-1387957 [Candidatus Amoebophilus asiaticus 5a2] [TssB/TssC]
ATGCCAGAAAATTTAAAAACTCCCGGCGTATATATCGTCGAGAAGGACACCGGTGCCAATGCTGTGGTTCAGGTGGCAAC
TGCAGTTCCCGTTTTCATAGGATTTACCGAGCGGGCAGAAATCAATGGAAAATCTTTCCATATGAAGCCGGTGCATATTA
ACTCTTTATCTGAGTTTGAAATATTCTATGGAAAAGCACCTGTGCCTGTCTTTACCGTTAAACCTGCAGAAAAAGGAGGT
GGAGATCTTAATATGAATGGACAAATGTATACCTTACAACAAAGTCCTTATTCAAAATTTTACCTATACAATAGTTTAAA
ATTATTTTTTGATAATGGTGGTGCAGATTGCTACATCATATCTATTGGACAATATGGTAAAGATCCACAACTGCTAGCAA
TTACCCCTGATACATTCAAAAAAGCAATAGATACCTTAGCAGGCGAAGAAGTACCTACTATGTTGCTTATGCCCGACTCT
CTGCTACTAGATGAAGAAGATTCTTCTTATTATTCTGTACAAACATATGCTTTGCAACATTGTGGCAAATATATGGATAA
AGTAGCGCTATTTGATATCTGGGGAAGTGGAGAAGAGCTTCCATTAGGAGAAGACAAAAATAAATATGTAACTCGATTTA
GAGAAAATATAGGCTTAGACAACCTAACCTATGGTGCAGCGTACTACCCTTGGGTTAAAACCAATATCATATCAATCAAC
GATATTGGATATGAGAACTTTAATTTAGATTCTTTAGAATCTCTTATTAATGAAGCACACAAACCTATCCTGCACAATAT
CAAAACTGCTACTAGCGAAAAGGAGAAAAAATATTGGGATGCAGGACTTAAAAATGCTAGTAAAGAATATAAGCTTCTAC
GTAAAACTATAGCAGACAGACTTAATGTATTGCCAGCAGCACCAGCTATGGCAGGGTTGTACACACGTACTGATAGAAGT
AGAGGCGTATGGATAGCACCAGCTAACCAAAACCTAAATTCTGTTATTGAGCCTGCTATTAAGATTACGCATGAAGATCA
AGAAACTCTTAACGTAGATGCTATAAGCGGAAAATCTATTAATGCTATCCGTGCATTTAGAGGAAGAGGATCTGCTATTG
TTTGGGGGGCAAGAACGTTGGCAGGCAACAATGTAGAATGGCGCTATATTAACGTAAGGAGATTATTTATACTTATTGAA
CAGTCTATCAAACAAGCATCCTTCTCTGTTGTATTCCAACCTAACGTATCCATAACCTGGGCTATAGTAAAAGGAAGTAT
TGGTAACTTCTTAACCAACTTGTGGAGACAAGGTGCTTTAGTAGGAAACACTCCTTCTGAAGCCTTTACAGTAAGCTGTG
GACTTGGTGAAACTATGACTCAAGAAGACATTAATGAAGGTATCATGCGAATAAAAGTTCAGGCAGCAGCTTCTAGACCA
GCAGAGTTTATCGTCATTACATTTGAGCAAAAGATGGGCGGACAAGAAGGAAGTTAA
ATGCCAGAAAATTTAAAAACTCCCGGCGTATATATCGTCGAGAAGGACACCGGTGCCAATGCTGTGGTTCAGGTGGCAAC
TGCAGTTCCCGTTTTCATAGGATTTACCGAGCGGGCAGAAATCAATGGAAAATCTTTCCATATGAAGCCGGTGCATATTA
ACTCTTTATCTGAGTTTGAAATATTCTATGGAAAAGCACCTGTGCCTGTCTTTACCGTTAAACCTGCAGAAAAAGGAGGT
GGAGATCTTAATATGAATGGACAAATGTATACCTTACAACAAAGTCCTTATTCAAAATTTTACCTATACAATAGTTTAAA
ATTATTTTTTGATAATGGTGGTGCAGATTGCTACATCATATCTATTGGACAATATGGTAAAGATCCACAACTGCTAGCAA
TTACCCCTGATACATTCAAAAAAGCAATAGATACCTTAGCAGGCGAAGAAGTACCTACTATGTTGCTTATGCCCGACTCT
CTGCTACTAGATGAAGAAGATTCTTCTTATTATTCTGTACAAACATATGCTTTGCAACATTGTGGCAAATATATGGATAA
AGTAGCGCTATTTGATATCTGGGGAAGTGGAGAAGAGCTTCCATTAGGAGAAGACAAAAATAAATATGTAACTCGATTTA
GAGAAAATATAGGCTTAGACAACCTAACCTATGGTGCAGCGTACTACCCTTGGGTTAAAACCAATATCATATCAATCAAC
GATATTGGATATGAGAACTTTAATTTAGATTCTTTAGAATCTCTTATTAATGAAGCACACAAACCTATCCTGCACAATAT
CAAAACTGCTACTAGCGAAAAGGAGAAAAAATATTGGGATGCAGGACTTAAAAATGCTAGTAAAGAATATAAGCTTCTAC
GTAAAACTATAGCAGACAGACTTAATGTATTGCCAGCAGCACCAGCTATGGCAGGGTTGTACACACGTACTGATAGAAGT
AGAGGCGTATGGATAGCACCAGCTAACCAAAACCTAAATTCTGTTATTGAGCCTGCTATTAAGATTACGCATGAAGATCA
AGAAACTCTTAACGTAGATGCTATAAGCGGAAAATCTATTAATGCTATCCGTGCATTTAGAGGAAGAGGATCTGCTATTG
TTTGGGGGGCAAGAACGTTGGCAGGCAACAATGTAGAATGGCGCTATATTAACGTAAGGAGATTATTTATACTTATTGAA
CAGTCTATCAAACAAGCATCCTTCTCTGTTGTATTCCAACCTAACGTATCCATAACCTGGGCTATAGTAAAAGGAAGTAT
TGGTAACTTCTTAACCAACTTGTGGAGACAAGGTGCTTTAGTAGGAAACACTCCTTCTGAAGCCTTTACAGTAAGCTGTG
GACTTGGTGAAACTATGACTCAAGAAGACATTAATGAAGGTATCATGCGAATAAAAGTTCAGGCAGCAGCTTCTAGACCA
GCAGAGTTTATCGTCATTACATTTGAGCAAAAGATGGGCGGACAAGAAGGAAGTTAA