Detailed information of component protein
Summary
| Component ID | T6CP015292 |
| Component protein type | Unknown |
| T6SS ID (Type) | T6SS01207  (Type iv) |
| Strain | Candidatus Amoebophilus asiaticus 5a2 |
| Replicon | chromosome |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Reference | - |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AASI_RS05460 |
| Coordinate (Strand) | 1380571..1381047 (+) |
| NCBI ID | WP_187146253.1 |
| RefSeq | NC_010830 |
| Uniprot ID | UPI00030E493F |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | MFLFSFLGCGESVPPMPSAETYRINNNQTQPPQLSQEWEDKLKLVDGEPGLGDFRANLIELTEESRAVILSMLNNMGNRNHEIRFLQDFISFNRRQQSHLINIFLHLENQNKPLLEKAIRCYTCTNIFEKYKLSKMFDSLEHNCQDLIMEFVNKLQEE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.5572 | - | - |
Protein sequence: 159 a.a.
>T6CP015292 NC_010830:1380571-1381047 [Candidatus Amoebophilus asiaticus 5a2] [Unknown]
MFLFSFLGCGESVPPMPSAETYRINNNQTQPPQLSQEWEDKLKLVDGEPGLGDFRANLIELTEESRAVILSMLNNMGNRN
HEIRFLQDFISFNRRQQSHLINIFLHLENQNKPLLEKAIRCYTCTNIFEKYKLSKMFDSLEHNCQDLIMEFVNKLQEE*
MFLFSFLGCGESVPPMPSAETYRINNNQTQPPQLSQEWEDKLKLVDGEPGLGDFRANLIELTEESRAVILSMLNNMGNRN
HEIRFLQDFISFNRRQQSHLINIFLHLENQNKPLLEKAIRCYTCTNIFEKYKLSKMFDSLEHNCQDLIMEFVNKLQEE*
Nucleotide sequence: 477 bp
>T6CP015292 NC_010830:1380571-1381047 [Candidatus Amoebophilus asiaticus 5a2] [Unknown]
ATGTTTTTGTTTTCTTTTTTAGGCTGTGGAGAATCTGTACCTCCTATGCCTTCTGCAGAAACTTATAGAATTAATAACAA
TCAGACACAACCTCCACAGTTAAGCCAAGAGTGGGAAGATAAACTTAAGTTAGTAGATGGTGAGCCTGGCTTAGGCGACT
TTAGAGCTAATTTAATAGAACTTACAGAAGAGAGTAGAGCAGTGATATTGTCTATGTTGAATAATATGGGTAATAGAAAC
CATGAAATACGTTTTCTGCAAGACTTTATAAGTTTTAATAGAAGACAGCAAAGCCACTTAATCAATATATTTCTTCATCT
AGAAAATCAAAATAAGCCCTTATTAGAAAAAGCGATTAGGTGTTATACTTGTACGAATATATTTGAAAAATATAAATTAA
GTAAAATGTTCGACTCTTTGGAACACAATTGTCAAGATTTAATCATGGAGTTTGTAAATAAGTTACAAGAAGAGTAA
ATGTTTTTGTTTTCTTTTTTAGGCTGTGGAGAATCTGTACCTCCTATGCCTTCTGCAGAAACTTATAGAATTAATAACAA
TCAGACACAACCTCCACAGTTAAGCCAAGAGTGGGAAGATAAACTTAAGTTAGTAGATGGTGAGCCTGGCTTAGGCGACT
TTAGAGCTAATTTAATAGAACTTACAGAAGAGAGTAGAGCAGTGATATTGTCTATGTTGAATAATATGGGTAATAGAAAC
CATGAAATACGTTTTCTGCAAGACTTTATAAGTTTTAATAGAAGACAGCAAAGCCACTTAATCAATATATTTCTTCATCT
AGAAAATCAAAATAAGCCCTTATTAGAAAAAGCGATTAGGTGTTATACTTGTACGAATATATTTGAAAAATATAAATTAA
GTAAAATGTTCGACTCTTTGGAACACAATTGTCAAGATTTAATCATGGAGTTTGTAAATAAGTTACAAGAAGAGTAA