Detailed information of component protein


Summary

Component ID T6CP015304
Component protein type TssF/TssG
T6SS ID (Type) T6SS01207 experimental (Type iv)
Strain Candidatus Amoebophilus asiaticus 5a2
Replicon chromosome
Sequence Protein sequence (832 a.a.); Nucleotide sequence (2496 bp)
Reference
-
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AASI_RS05535
Coordinate (Strand) 1394411..1396906 (+)
NCBI ID WP_012473186.1
RefSeq NC_010830
Uniprot ID B3ET76_AMOA5
KEGG ID aas:Aasi_1083
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-831 VADYTTKLLDLNYPFLKQQGIAYIRQLAGHIWNDYNEHDPGITILEELCYAIIDLEYRTNFYIEDLLASDPNNAIEEGIKNFYVAEEILPCNPLTKNDFLKLILDVNGVKNAKIFLSEAPQEIQGGYKILLDLEDRIINKGQANAVIENVKRRLYSCRNLCEDFFLVQLLEPLYININAALELTESITQEEGELLIAAIYSNIHSFIAPYIKFYSLREMLLEKNKKVDEIFTGPLLEQGFIDEAELEQSIIQQKIYISEILKKVTDVKQVQSVTKFIVALDGQTAMSAKMAIDIPVDRVPKIDIEQSRITLYHKGIPLPIDYNKVKRWTEENVNAPLFKRPYLTEEEIDVDPGRFRNLANYISIQNDFPLIYGVGKEGLSNTVLEDRKVQSKQLKAYLMFFDQVFANYLAQLAHVKDLLAVQKKSSKVDFSQIPQEVPLLHTLIKKPETPVDATESDPDKAFKIQRRYLGVSWKKSKSKWGTTEADIEEAYKHYLDKILGISKEYTDKKNNILDHLLARFAETFADRAMQLYDTVYKSCLGEISEDKELFLQDYIAISRDRNKAVDITNTQNYGWDIDNISGFERRICRALGIKNLKRRVLHENLKSNFYLEQNFEQQSFEVFLSENLQAKYDNLLIFKGNYPKIKDLAISRGGKESNYDIVENSEGNYEVLLYIDKRRTKFIRLLNKVVTIRTFEQAQAVIKQAVTFFEIFNKESEGFHLLEHIMLRTNDTLSGTHDPYSFMMTLVFPSWPARFQRAEFKNLIHEFVMLESPAHIFVNVLWLDLTEMETFEKAYKEWMFYRTTEDPSDAKLKEAARHLLGLIMLYSKGQE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9985 - -


  Protein sequence: 832 a.a.    

>T6CP015304 NC_010830:1394411-1396906 [Candidatus Amoebophilus asiaticus 5a2] [TssF/TssG]
VADYTTKLLDLNYPFLKQQGIAYIRQLAGHIWNDYNEHDPGITILEELCYAIIDLEYRTNFYIEDLLASDPNNAIEEGIK
NFYVAEEILPCNPLTKNDFLKLILDVNGVKNAKIFLSEAPQEIQGGYKILLDLEDRIINKGQANAVIENVKRRLYSCRNL
CEDFFLVQLLEPLYININAALELTESITQEEGELLIAAIYSNIHSFIAPYIKFYSLREMLLEKNKKVDEIFTGPLLEQGF
IDEAELEQSIIQQKIYISEILKKVTDVKQVQSVTKFIVALDGQTAMSAKMAIDIPVDRVPKIDIEQSRITLYHKGIPLPI
DYNKVKRWTEENVNAPLFKRPYLTEEEIDVDPGRFRNLANYISIQNDFPLIYGVGKEGLSNTVLEDRKVQSKQLKAYLMF
FDQVFANYLAQLAHVKDLLAVQKKSSKVDFSQIPQEVPLLHTLIKKPETPVDATESDPDKAFKIQRRYLGVSWKKSKSKW
GTTEADIEEAYKHYLDKILGISKEYTDKKNNILDHLLARFAETFADRAMQLYDTVYKSCLGEISEDKELFLQDYIAISRD
RNKAVDITNTQNYGWDIDNISGFERRICRALGIKNLKRRVLHENLKSNFYLEQNFEQQSFEVFLSENLQAKYDNLLIFKG
NYPKIKDLAISRGGKESNYDIVENSEGNYEVLLYIDKRRTKFIRLLNKVVTIRTFEQAQAVIKQAVTFFEIFNKESEGFH
LLEHIMLRTNDTLSGTHDPYSFMMTLVFPSWPARFQRAEFKNLIHEFVMLESPAHIFVNVLWLDLTEMETFEKAYKEWMF
YRTTEDPSDAKLKEAARHLLGLIMLYSKGQE*

  Nucleotide sequence: 2496 bp    

>T6CP015304 NC_010830:1394411-1396906 [Candidatus Amoebophilus asiaticus 5a2] [TssF/TssG]
GTGGCTGATTATACAACAAAACTCTTAGACCTTAATTATCCTTTCCTTAAACAGCAAGGCATAGCATATATTCGTCAATT
AGCCGGGCATATTTGGAATGATTATAATGAGCATGACCCTGGAATTACCATTTTAGAGGAGCTATGTTATGCCATTATAG
ATTTAGAATACCGTACTAATTTTTATATAGAAGACTTACTAGCATCAGATCCTAATAATGCTATAGAAGAAGGCATAAAG
AATTTCTATGTTGCTGAAGAGATACTCCCTTGCAACCCACTTACTAAAAATGATTTTCTAAAGCTTATCTTAGATGTTAA
TGGCGTTAAAAACGCTAAAATATTTTTGAGTGAAGCTCCTCAAGAAATACAAGGTGGTTATAAAATACTCTTAGACTTAG
AAGACCGAATTATTAATAAAGGACAGGCTAATGCTGTTATAGAAAACGTAAAAAGAAGACTATACAGCTGTAGAAACCTA
TGTGAAGACTTTTTTTTAGTACAACTCTTAGAACCCTTATATATCAATATTAATGCTGCTTTAGAGCTTACTGAAAGTAT
TACCCAAGAAGAAGGCGAATTGTTAATAGCAGCAATATATTCCAACATACACTCATTTATAGCACCTTATATTAAGTTCT
ATAGCTTGCGGGAAATGCTTTTGGAGAAAAATAAGAAAGTAGATGAAATTTTTACAGGTCCTTTACTAGAGCAAGGTTTT
ATAGATGAGGCTGAGTTAGAACAGAGTATTATCCAACAAAAAATTTATATATCTGAAATTCTTAAAAAGGTTACAGATGT
TAAGCAAGTGCAAAGTGTAACGAAATTTATAGTAGCACTAGATGGCCAAACAGCTATGTCTGCAAAAATGGCCATTGATA
TACCAGTAGATAGAGTACCTAAAATAGACATTGAGCAAAGCCGAATTACACTTTATCATAAAGGAATTCCCTTGCCTATA
GATTATAATAAAGTAAAAAGATGGACAGAAGAAAATGTAAATGCACCTCTCTTTAAAAGGCCTTACTTAACTGAAGAAGA
AATAGATGTTGACCCAGGTAGATTCAGAAACCTAGCTAATTATATTTCTATACAAAATGACTTTCCATTAATTTATGGTG
TAGGAAAAGAAGGGCTGTCTAATACTGTGCTTGAAGATAGAAAAGTACAATCCAAGCAACTGAAAGCTTATCTTATGTTC
TTTGATCAAGTTTTTGCTAATTATTTAGCACAGCTAGCACACGTCAAAGACCTATTAGCCGTTCAGAAAAAATCTAGTAA
GGTAGATTTTTCTCAAATTCCACAAGAGGTTCCTTTACTACACACCTTAATTAAAAAACCTGAAACTCCAGTTGATGCAA
CCGAAAGTGATCCGGATAAAGCATTTAAGATTCAAAGAAGATATTTAGGAGTTAGTTGGAAAAAAAGTAAAAGTAAATGG
GGAACTACTGAGGCAGATATAGAAGAAGCTTATAAACATTACCTTGATAAGATTTTGGGTATAAGCAAAGAGTATACAGA
CAAAAAGAATAATATTTTAGACCACTTGCTAGCTAGGTTTGCTGAAACTTTTGCAGATAGAGCTATGCAACTCTATGACA
CAGTGTATAAATCTTGCTTGGGAGAGATTAGCGAAGACAAAGAACTCTTTTTGCAAGATTATATAGCTATCAGTAGAGAC
AGAAACAAGGCAGTGGATATTACCAATACACAAAATTATGGGTGGGATATAGATAATATTTCTGGTTTTGAACGTAGAAT
ATGCCGTGCTTTAGGAATTAAAAACTTAAAAAGAAGAGTTTTACATGAGAATTTAAAAAGTAACTTTTACTTAGAGCAAA
ACTTTGAACAACAGAGTTTCGAAGTGTTTCTAAGTGAAAACTTACAAGCAAAATATGATAACCTATTAATATTTAAAGGA
AACTATCCAAAAATTAAGGATTTAGCTATCAGCCGTGGCGGCAAAGAGAGCAATTATGATATCGTAGAAAATTCAGAAGG
TAATTATGAAGTATTGCTGTATATAGATAAAAGAAGAACCAAGTTTATTAGACTACTTAACAAAGTAGTAACCATTCGTA
CTTTTGAGCAAGCACAGGCTGTTATTAAACAGGCAGTCACTTTTTTTGAAATATTCAACAAAGAAAGCGAAGGATTCCAC
CTGCTAGAACACATTATGCTAAGAACTAATGATACACTAAGCGGTACACACGATCCTTACTCTTTTATGATGACGCTGGT
CTTTCCTTCTTGGCCAGCACGTTTTCAGCGAGCAGAATTTAAAAATCTCATCCATGAATTTGTGATGTTAGAAAGCCCAG
CACACATCTTTGTTAATGTATTATGGTTAGACTTAACAGAAATGGAAACTTTCGAAAAAGCCTATAAAGAATGGATGTTC
TATAGAACTACCGAAGATCCTAGTGATGCTAAGCTTAAAGAAGCAGCACGCCACCTTTTGGGACTGATCATGCTTTATTC
TAAAGGACAAGAATAA