Detailed information of component protein


Summary

Component ID T6CP015305
Component protein type T6SSiv-tape measure
T6SS ID (Type) T6SS01207 experimental (Type iv)
Strain Candidatus Amoebophilus asiaticus 5a2
Replicon chromosome
Sequence Protein sequence (1570 a.a.); Nucleotide sequence (4710 bp)
Reference
-
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AASI_RS05540
Coordinate (Strand) 1396913..1401622 (+)
NCBI ID WP_148204969.1
RefSeq NC_010830
Uniprot ID UPI000171470D
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
CIS_TMP PF19268.1 1.2e-30 1093..1566
CIS_TMP PF19268.1 4.7e-29 5..283

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-1569 MNTYSHIIMRQRLTIDIPDKSYQQEVQDKVKRILEQKLNEILEKSFAANVPKDVVITLDQVNINLADTTPDSLEENILQQIYHKLPTVIKEQVDLAIKDPLKRRITPLPHAKLQAVKHYLLYGYFAWWMPAHNEKIIENLYTEIYHKTPTAIKELWVELSDKPPAIQRFIEQFSDTIIQKSILLLSPSQAQHVLNISEDFSKLQPILLKITPPSAQKKLHTATKYTVLTQSIQYLSISKNFNEINFIKICLQQIAKEFNTSYPALITNLSRELSKQALPFNLTSKLASHIIRLYDTEVAINNSNSTPPAKLSMLIRKLDGLLAQKKDINKRQLSNTINEVFAQVKSPAARSTLAGYLTSISHTRQLTQYLSTKDFIKLIEVLQPAIQNAFTIIKQVWQAVMPPEKKSHQLIEQLTVKYLNKKTSNQQEPHAYISYLIGKLHSYVDNNLEKWAPFIKENVATLEKKYTNELTKVLLSNLPAHNAQSPSQVQSILSISSLDEFFIETINKIQEHPAFTSDHALTILLGNLYQDLSFFIQGNKPLSLASEKKLLNNVENIFKHVITDNEQLHCATKQFIPWIKQQANKAEPYNLGNSVQIFQNKLADLLSKQDSSKEYQNDVVAKSEHITVSLIKEFFTHQLLPPGYVHQSALMSNIIRQLVYIPGFQDELYDLLQQQGIRKQLVKNITPAAKSMLLNTVVPMSIDTRQTYEQILFKADILRADTSIDKQALLEDIFLESATQSLETSEEDFIQHSLLILSYNAQLPKQEVYRRIHLSAQKHPPTISLTHKLQQLYPLFETAAPAIADVLDRAFLPIYNLLKSFLDPQILTPVLYAQLLAFMKNIIENRLTTAVTDKELYQQIHKLFPMLPAHQKQHFFESIKKKLQEVAAKQLQTLQATWLHFLHTGELLEEYKSATELFNNLLLGIASKNKNTNNNLATTPLIHNLPDSDIRQTTISLITTLQTPHTRKRLVASLSTQDLEKVVQLVAKEKSKIVLNYIHNIYEIWNYTGFFNISSQESKLAWWEATLPTLVNTNTSAFSEKDWLAESLSEFATLLELPFTTVLSSLTTYAKASSKPFKLVKGNIEELNKILIDIEQEWLKTVKQEAKKAWPTQATFQELHQLFNIGYSSFNKHTSTSLDALDQQVSNLINQQLSSVKKFLYTYPKPAILSQQIAYYFSTPLIKQLIYCLDTKAHPFIQQYIEFSNLHQPDFYETQGIDTFNWCKYSEVATLSYLLEKKDTAFDKQKYLLHILEIYQKHIKQDIQSVLESLVTYHTQYKRTTAYDEVIQQLQNIFVTNSGLTAAIQKPIEKQEEENTATASITSQQNKSRFQDYQKEQPSKEIKLYIKNSGLVFLWPFIEGLLEKQDLLKNQVFFGNLERSNAIHTLQYLVTEQLSTPDWRIILNKLLCGMAYNDIPFAGYYLWDESDFAKRVIEEQEKALAQADNQGTRRKHKKRSNKTPVIELPEEIVLLKNNTEELLTKILTEWKSLKKLEKFEPFKQGFGIQDFKKYILQRDGILQYIDQGDKGGYWHLTITWEEYDAEITKTPWPINKIYLPFMKEELVVFWTPS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9963 - -



  Protein sequence: 1570 a.a.    

>T6CP015305 NC_010830:1396913-1401622 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-tape measure]
MNTYSHIIMRQRLTIDIPDKSYQQEVQDKVKRILEQKLNEILEKSFAANVPKDVVITLDQVNINLADTTPDSLEENILQQ
IYHKLPTVIKEQVDLAIKDPLKRRITPLPHAKLQAVKHYLLYGYFAWWMPAHNEKIIENLYTEIYHKTPTAIKELWVELS
DKPPAIQRFIEQFSDTIIQKSILLLSPSQAQHVLNISEDFSKLQPILLKITPPSAQKKLHTATKYTVLTQSIQYLSISKN
FNEINFIKICLQQIAKEFNTSYPALITNLSRELSKQALPFNLTSKLASHIIRLYDTEVAINNSNSTPPAKLSMLIRKLDG
LLAQKKDINKRQLSNTINEVFAQVKSPAARSTLAGYLTSISHTRQLTQYLSTKDFIKLIEVLQPAIQNAFTIIKQVWQAV
MPPEKKSHQLIEQLTVKYLNKKTSNQQEPHAYISYLIGKLHSYVDNNLEKWAPFIKENVATLEKKYTNELTKVLLSNLPA
HNAQSPSQVQSILSISSLDEFFIETINKIQEHPAFTSDHALTILLGNLYQDLSFFIQGNKPLSLASEKKLLNNVENIFKH
VITDNEQLHCATKQFIPWIKQQANKAEPYNLGNSVQIFQNKLADLLSKQDSSKEYQNDVVAKSEHITVSLIKEFFTHQLL
PPGYVHQSALMSNIIRQLVYIPGFQDELYDLLQQQGIRKQLVKNITPAAKSMLLNTVVPMSIDTRQTYEQILFKADILRA
DTSIDKQALLEDIFLESATQSLETSEEDFIQHSLLILSYNAQLPKQEVYRRIHLSAQKHPPTISLTHKLQQLYPLFETAA
PAIADVLDRAFLPIYNLLKSFLDPQILTPVLYAQLLAFMKNIIENRLTTAVTDKELYQQIHKLFPMLPAHQKQHFFESIK
KKLQEVAAKQLQTLQATWLHFLHTGELLEEYKSATELFNNLLLGIASKNKNTNNNLATTPLIHNLPDSDIRQTTISLITT
LQTPHTRKRLVASLSTQDLEKVVQLVAKEKSKIVLNYIHNIYEIWNYTGFFNISSQESKLAWWEATLPTLVNTNTSAFSE
KDWLAESLSEFATLLELPFTTVLSSLTTYAKASSKPFKLVKGNIEELNKILIDIEQEWLKTVKQEAKKAWPTQATFQELH
QLFNIGYSSFNKHTSTSLDALDQQVSNLINQQLSSVKKFLYTYPKPAILSQQIAYYFSTPLIKQLIYCLDTKAHPFIQQY
IEFSNLHQPDFYETQGIDTFNWCKYSEVATLSYLLEKKDTAFDKQKYLLHILEIYQKHIKQDIQSVLESLVTYHTQYKRT
TAYDEVIQQLQNIFVTNSGLTAAIQKPIEKQEEENTATASITSQQNKSRFQDYQKEQPSKEIKLYIKNSGLVFLWPFIEG
LLEKQDLLKNQVFFGNLERSNAIHTLQYLVTEQLSTPDWRIILNKLLCGMAYNDIPFAGYYLWDESDFAKRVIEEQEKAL
AQADNQGTRRKHKKRSNKTPVIELPEEIVLLKNNTEELLTKILTEWKSLKKLEKFEPFKQGFGIQDFKKYILQRDGILQY
IDQGDKGGYWHLTITWEEYDAEITKTPWPINKIYLPFMKEELVVFWTPS*

  Nucleotide sequence: 4710 bp    

>T6CP015305 NC_010830:1396913-1401622 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-tape measure]
ATGAATACATATAGTCACATTATCATGCGCCAACGCCTGACAATAGATATTCCTGACAAAAGTTATCAACAAGAAGTACA
AGATAAAGTCAAGAGAATACTTGAGCAAAAACTAAATGAAATACTAGAAAAGTCCTTTGCTGCAAATGTGCCTAAAGATG
TAGTTATAACACTCGATCAAGTAAATATCAATCTAGCAGATACAACCCCTGATTCATTAGAAGAAAATATTTTACAGCAA
ATTTACCATAAACTACCGACCGTAATTAAAGAACAGGTTGACTTAGCTATAAAAGATCCTTTAAAAAGAAGAATTACTCC
TCTTCCACATGCTAAGCTACAAGCTGTTAAGCATTATCTTTTATATGGGTATTTTGCTTGGTGGATGCCCGCCCACAATG
AAAAGATTATTGAAAATCTGTATACAGAAATTTATCATAAAACACCTACTGCTATTAAAGAATTATGGGTAGAACTTAGT
GATAAGCCACCAGCCATTCAAAGGTTTATAGAACAATTTAGTGATACAATTATACAAAAGTCCATTCTACTTCTTAGTCC
TAGCCAGGCACAGCACGTATTAAATATCTCTGAGGATTTTTCAAAACTACAACCTATTTTATTAAAAATAACGCCACCAT
CTGCACAAAAGAAATTACACACAGCTACTAAATATACTGTGCTAACCCAATCAATTCAGTATTTATCTATTAGCAAGAAT
TTTAATGAGATCAATTTTATTAAAATATGCTTGCAGCAAATTGCTAAAGAATTTAATACAAGCTACCCGGCACTAATAAC
AAATCTATCACGCGAACTCTCAAAGCAGGCCTTGCCATTTAATTTAACGAGCAAGCTTGCCAGCCATATCATACGCTTAT
ACGATACAGAAGTTGCCATCAATAATTCCAATTCCACACCACCTGCTAAACTTTCTATGCTTATTAGAAAATTAGATGGG
TTGCTAGCACAAAAAAAGGATATTAATAAGCGTCAGCTTTCCAATACCATCAATGAAGTATTTGCTCAAGTTAAAAGTCC
TGCAGCTAGGTCTACATTAGCAGGCTATCTTACATCTATCTCACATACTAGACAGTTGACACAATACTTGTCTACCAAAG
ATTTTATAAAACTTATTGAAGTTCTACAGCCAGCTATACAAAATGCTTTTACAATTATTAAACAAGTATGGCAGGCTGTA
ATGCCTCCAGAAAAGAAAAGCCATCAACTTATTGAACAGCTTACAGTAAAATATTTAAATAAAAAAACTTCTAACCAACA
AGAACCTCATGCTTATATCAGTTATTTAATAGGCAAGCTACATTCTTATGTAGACAATAATTTAGAGAAGTGGGCTCCAT
TCATTAAAGAAAATGTAGCTACATTAGAAAAAAAGTATACTAATGAGTTGACTAAAGTATTGTTAAGTAATTTACCTGCA
CATAATGCACAATCACCCAGCCAGGTACAATCTATACTTTCCATATCGTCTTTAGACGAATTCTTTATAGAAACAATTAA
TAAAATCCAAGAACACCCAGCGTTTACTTCTGACCATGCTCTAACTATATTACTAGGCAATTTATATCAAGATTTATCCT
TTTTTATACAAGGAAACAAACCACTCTCTTTAGCGTCAGAAAAAAAGCTCTTAAATAATGTAGAAAATATATTTAAGCAT
GTTATTACAGATAACGAGCAGCTTCACTGTGCTACAAAGCAATTCATACCTTGGATAAAACAACAGGCGAATAAAGCAGA
GCCATACAACCTAGGAAATAGCGTACAGATATTCCAAAATAAGCTTGCGGATTTATTATCAAAGCAGGATTCTTCAAAAG
AATATCAGAATGACGTAGTAGCAAAATCTGAACATATTACTGTTTCACTGATAAAAGAATTTTTTACTCACCAACTATTA
CCACCTGGCTATGTTCATCAATCAGCATTAATGTCAAATATTATAAGGCAATTAGTATATATACCTGGCTTTCAAGATGA
GTTATATGATTTACTTCAACAGCAGGGCATACGGAAACAATTAGTAAAAAATATAACACCTGCAGCTAAAAGCATGTTGT
TAAATACCGTAGTACCCATGTCCATAGACACAAGGCAAACATATGAACAGATACTATTTAAGGCCGATATATTGCGAGCA
GATACCTCAATAGATAAGCAAGCACTTTTAGAAGACATCTTCTTAGAATCTGCTACCCAAAGTTTAGAGACTAGCGAAGA
AGATTTTATACAACATTCTTTACTTATTCTTTCATACAATGCCCAATTACCTAAACAAGAAGTATATAGAAGAATACATT
TGTCTGCACAGAAACATCCACCAACTATATCATTGACTCATAAGCTTCAACAACTATATCCTTTATTTGAAACAGCAGCC
CCGGCAATAGCAGATGTATTAGATAGAGCATTTTTACCCATTTATAATTTACTAAAAAGCTTCTTAGACCCTCAAATCTT
AACACCCGTCTTATATGCACAATTGTTAGCTTTTATGAAAAATATCATTGAAAATAGGCTAACAACAGCAGTTACGGATA
AAGAGCTGTATCAGCAAATACATAAGCTTTTTCCTATGTTACCTGCTCATCAAAAGCAACACTTTTTTGAATCAATCAAG
AAAAAGCTCCAAGAAGTAGCTGCTAAGCAACTACAGACTTTACAAGCTACTTGGCTACATTTTTTACATACTGGTGAGTT
ACTAGAAGAATACAAAAGTGCTACTGAGCTCTTTAATAATTTATTACTAGGTATTGCTTCAAAAAATAAAAATACCAATA
ACAATTTAGCTACTACTCCTCTCATACATAATCTACCAGATTCAGATATACGACAAACCACTATCTCACTTATAACAACC
TTACAAACTCCACATACTAGGAAAAGGTTAGTAGCTAGCTTGTCTACACAAGATTTAGAAAAAGTAGTGCAATTAGTAGC
TAAAGAGAAAAGTAAAATTGTTCTTAATTATATCCATAACATATATGAAATATGGAATTATACCGGATTTTTCAATATTT
CTTCTCAAGAAAGTAAGCTAGCTTGGTGGGAAGCTACCTTGCCAACTTTAGTTAATACAAATACAAGCGCTTTTTCAGAA
AAAGATTGGTTAGCAGAGAGCTTATCAGAATTTGCTACATTACTAGAATTGCCTTTCACCACAGTACTCTCTTCCTTAAC
AACATATGCTAAAGCCAGTTCCAAACCTTTTAAGCTAGTAAAAGGGAATATAGAAGAATTAAATAAGATATTGATTGATA
TTGAACAAGAATGGCTTAAAACAGTTAAACAAGAAGCTAAAAAAGCCTGGCCTACACAAGCTACTTTTCAAGAGCTACAC
CAACTCTTCAATATAGGATATAGCAGTTTCAATAAGCATACGTCAACTAGTTTGGACGCTCTGGATCAGCAAGTAAGCAA
TTTAATCAACCAGCAACTTTCGTCAGTAAAGAAGTTTTTATATACTTATCCAAAACCTGCTATTTTAAGCCAACAAATAG
CATACTACTTTTCTACTCCTCTTATTAAGCAGCTCATCTATTGTCTAGATACAAAAGCACATCCGTTTATTCAACAATAT
ATAGAATTTAGCAACTTACACCAGCCAGATTTTTATGAGACTCAAGGCATAGATACATTTAATTGGTGCAAATATAGCGA
GGTGGCAACCCTGTCTTATCTATTAGAAAAAAAAGATACAGCTTTTGATAAACAGAAATACTTGCTACACATTTTAGAAA
TATATCAGAAACATATCAAGCAAGACATACAGTCAGTCCTAGAATCGCTTGTTACTTATCATACACAATACAAGCGTACC
ACAGCATATGATGAAGTAATACAACAGCTGCAAAATATTTTTGTAACTAATAGTGGACTAACTGCAGCAATACAAAAACC
CATTGAAAAACAAGAAGAAGAGAATACTGCTACAGCATCTATAACGTCACAACAAAACAAATCCAGGTTTCAGGATTACC
AAAAAGAGCAACCTAGCAAAGAAATAAAGTTATATATTAAAAACAGTGGGCTTGTTTTTTTATGGCCCTTTATAGAGGGC
CTCCTCGAAAAGCAGGATTTATTAAAAAATCAAGTATTTTTTGGTAACCTTGAACGTAGCAATGCAATACATACATTACA
ATATCTAGTAACAGAACAGCTTAGCACCCCTGACTGGCGTATTATACTTAACAAATTGCTATGTGGCATGGCCTATAATG
ATATTCCCTTTGCAGGCTATTATTTATGGGATGAATCAGATTTTGCTAAAAGGGTAATAGAAGAACAAGAAAAAGCTTTA
GCACAAGCTGATAACCAAGGCACTAGAAGAAAGCACAAAAAAAGATCTAATAAAACACCTGTTATAGAATTGCCAGAAGA
AATTGTCCTGTTAAAGAACAATACTGAGGAGTTATTAACCAAAATCCTAACAGAATGGAAAAGCCTTAAAAAACTTGAAA
AATTTGAGCCTTTTAAACAAGGATTTGGTATACAAGATTTTAAAAAATATATACTGCAAAGAGATGGGATACTACAGTAT
ATAGACCAAGGTGATAAAGGAGGGTATTGGCATTTAACCATTACTTGGGAAGAATATGATGCAGAAATTACAAAAACTCC
ATGGCCTATCAATAAAATTTACTTACCCTTTATGAAAGAAGAGTTAGTGGTATTTTGGACACCTAGTTAA