Detailed information of component protein
Summary
| Component ID | T6CP015293 |
| Component protein type | T6SSiv-tail terminator |
| T6SS ID (Type) | T6SS01207  (Type iv) |
| Strain | Candidatus Amoebophilus asiaticus 5a2 |
| Replicon | chromosome |
| Sequence | Protein sequence (194 a.a.); Nucleotide sequence (582 bp) |
| Reference | - |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AASI_RS05480 |
| Coordinate (Strand) | 1384998..1385579 (+) |
| NCBI ID | WP_012473175.1 |
| RefSeq | NC_010830 |
| Uniprot ID | B3ET65_AMOA5 |
| KEGG ID | aas:Aasi_1072 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Pvc16_N | PF14065.8 | 1.4e-23 | 8..176 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-193 | VFDACVHTILTEVNRYIKTRIGTNEDQVVYTNYADLELQQRGASVNHKNKIIMSVVDIVQEAINQNPNTYVQQGNNYIIKNLPVNFYVHILFAANYKDSQVLEGLKYLSSIIAFFQYKNHFTTQNTPTLQISNLEEFSAFLVKLDYQQKEALWSCLNTTYMPSVVYKIGLIPITDMPTFWQEIPAINKIDNPS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9893 | - | - |
Protein sequence: 194 a.a.
>T6CP015293 NC_010830:1384998-1385579 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-tail terminator]
VFDACVHTILTEVNRYIKTRIGTNEDQVVYTNYADLELQQRGASVNHKNKIIMSVVDIVQEAINQNPNTYVQQGNNYIIK
NLPVNFYVHILFAANYKDSQVLEGLKYLSSIIAFFQYKNHFTTQNTPTLQISNLEEFSAFLVKLDYQQKEALWSCLNTTY
MPSVVYKIGLIPITDMPTFWQEIPAINKIDNPS*
VFDACVHTILTEVNRYIKTRIGTNEDQVVYTNYADLELQQRGASVNHKNKIIMSVVDIVQEAINQNPNTYVQQGNNYIIK
NLPVNFYVHILFAANYKDSQVLEGLKYLSSIIAFFQYKNHFTTQNTPTLQISNLEEFSAFLVKLDYQQKEALWSCLNTTY
MPSVVYKIGLIPITDMPTFWQEIPAINKIDNPS*
Nucleotide sequence: 582 bp
>T6CP015293 NC_010830:1384998-1385579 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-tail terminator]
GTGTTTGATGCATGTGTTCATACCATTTTAACTGAGGTTAACAGGTATATAAAAACCAGAATAGGCACTAATGAAGATCA
AGTAGTTTATACTAATTATGCTGATTTAGAACTTCAACAACGAGGTGCTTCGGTCAACCACAAAAATAAAATTATAATGA
GTGTAGTAGATATTGTGCAAGAGGCTATTAACCAAAACCCTAACACATATGTACAACAAGGAAACAACTACATCATTAAA
AACCTACCGGTCAATTTTTATGTCCATATACTTTTTGCCGCCAATTATAAAGACAGCCAAGTCTTGGAGGGCTTAAAGTA
TTTGTCAAGCATTATAGCTTTCTTTCAGTATAAAAATCACTTTACTACACAAAATACACCAACCTTACAGATCTCCAATT
TAGAAGAATTTTCAGCATTTCTAGTAAAACTTGACTATCAACAAAAAGAAGCATTATGGAGTTGTCTTAATACTACTTAT
ATGCCTTCTGTAGTTTACAAAATAGGCTTGATTCCTATTACAGACATGCCAACATTTTGGCAAGAGATTCCTGCAATCAA
CAAAATCGATAATCCGTCCTAA
GTGTTTGATGCATGTGTTCATACCATTTTAACTGAGGTTAACAGGTATATAAAAACCAGAATAGGCACTAATGAAGATCA
AGTAGTTTATACTAATTATGCTGATTTAGAACTTCAACAACGAGGTGCTTCGGTCAACCACAAAAATAAAATTATAATGA
GTGTAGTAGATATTGTGCAAGAGGCTATTAACCAAAACCCTAACACATATGTACAACAAGGAAACAACTACATCATTAAA
AACCTACCGGTCAATTTTTATGTCCATATACTTTTTGCCGCCAATTATAAAGACAGCCAAGTCTTGGAGGGCTTAAAGTA
TTTGTCAAGCATTATAGCTTTCTTTCAGTATAAAAATCACTTTACTACACAAAATACACCAACCTTACAGATCTCCAATT
TAGAAGAATTTTCAGCATTTCTAGTAAAACTTGACTATCAACAAAAAGAAGCATTATGGAGTTGTCTTAATACTACTTAT
ATGCCTTCTGTAGTTTACAAAATAGGCTTGATTCCTATTACAGACATGCCAACATTTTGGCAAGAGATTCCTGCAATCAA
CAAAATCGATAATCCGTCCTAA