Detailed information of component protein


Summary

Component ID T6CP015293
Component protein type T6SSiv-tail terminator
T6SS ID (Type) T6SS01207 experimental (Type iv)
Strain Candidatus Amoebophilus asiaticus 5a2
Replicon chromosome
Sequence Protein sequence (194 a.a.); Nucleotide sequence (582 bp)
Reference
-
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AASI_RS05480
Coordinate (Strand) 1384998..1385579 (+)
NCBI ID WP_012473175.1
RefSeq NC_010830
Uniprot ID B3ET65_AMOA5
KEGG ID aas:Aasi_1072
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pvc16_N PF14065.8 1.4e-23 8..176

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-193 VFDACVHTILTEVNRYIKTRIGTNEDQVVYTNYADLELQQRGASVNHKNKIIMSVVDIVQEAINQNPNTYVQQGNNYIIKNLPVNFYVHILFAANYKDSQVLEGLKYLSSIIAFFQYKNHFTTQNTPTLQISNLEEFSAFLVKLDYQQKEALWSCLNTTYMPSVVYKIGLIPITDMPTFWQEIPAINKIDNPS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9893 - -



  Protein sequence: 194 a.a.    

>T6CP015293 NC_010830:1384998-1385579 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-tail terminator]
VFDACVHTILTEVNRYIKTRIGTNEDQVVYTNYADLELQQRGASVNHKNKIIMSVVDIVQEAINQNPNTYVQQGNNYIIK
NLPVNFYVHILFAANYKDSQVLEGLKYLSSIIAFFQYKNHFTTQNTPTLQISNLEEFSAFLVKLDYQQKEALWSCLNTTY
MPSVVYKIGLIPITDMPTFWQEIPAINKIDNPS*

  Nucleotide sequence: 582 bp    

>T6CP015293 NC_010830:1384998-1385579 [Candidatus Amoebophilus asiaticus 5a2] [T6SSiv-tail terminator]
GTGTTTGATGCATGTGTTCATACCATTTTAACTGAGGTTAACAGGTATATAAAAACCAGAATAGGCACTAATGAAGATCA
AGTAGTTTATACTAATTATGCTGATTTAGAACTTCAACAACGAGGTGCTTCGGTCAACCACAAAAATAAAATTATAATGA
GTGTAGTAGATATTGTGCAAGAGGCTATTAACCAAAACCCTAACACATATGTACAACAAGGAAACAACTACATCATTAAA
AACCTACCGGTCAATTTTTATGTCCATATACTTTTTGCCGCCAATTATAAAGACAGCCAAGTCTTGGAGGGCTTAAAGTA
TTTGTCAAGCATTATAGCTTTCTTTCAGTATAAAAATCACTTTACTACACAAAATACACCAACCTTACAGATCTCCAATT
TAGAAGAATTTTCAGCATTTCTAGTAAAACTTGACTATCAACAAAAAGAAGCATTATGGAGTTGTCTTAATACTACTTAT
ATGCCTTCTGTAGTTTACAAAATAGGCTTGATTCCTATTACAGACATGCCAACATTTTGGCAAGAGATTCCTGCAATCAA
CAAAATCGATAATCCGTCCTAA