Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01222  |
| T6SS type | Type i3 |
| Strain | Pantoea ananatis LMG 2665 |
| Replicon (GenBank) | chromosome (KF590027) |
| Location | 9267..43295 |
| Function | anti-bacterial; anti-eukaryotic |
| Comment | The T6SS-1 of P. ananatis LMG 2665T is required for pathogenesis in onion plants and is used to compete against different gram-negative bacteria |
| References | [1] Shyntum D et al (2014) Pantoea ananatis utilizes a type VI secretion system for pathogenesis and bacterial competition. Mol Plant Microbe Interact. doi:http://dx.doi.org/10.1094/MPMI-07-14-0219-R. [PudMed:25411959] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TagE | TagF | TagG | TagH | TagJ | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| N454_00602 (agxA) | 4621..5061 | - | 441 | 574093457 | AgxA | ||
| N454_00603 (agxB) | 5074..5922 | - | 849 | 574093458 | AgxB | ||
| N454_00604 (agxC) | 5935..6738 | - | 804 | 574093459 | AgxC | ||
| N454_00605 (agxD) | 6928..7308 | - | 381 | 574093460 | AgxD | ||
| N454_00606 (agxE) | 7597..8001 | - | 405 | 574093461 | AgxE | ||
| N454_00607 (agxF) | 8693..9304 | - | 612 | 574093462 | AgxF | ||
| T6CP015439 | TssI | N454_00608 (tssI-1) | 9267..10574 | - | 1308 | 574093463 | TssI |
| T6CP015440 | TssI | N454_00609 (tssI-2) | 10624..11001 | - | 378 | 574093464 | TssI |
| N454_00610 (agxG) | 11173..11454 | - | 282 | 574093465 | AgxG | ||
| N454_00611 (agxH) | 11664..12053 | - | 390 | 574093466 | AgxH | ||
| T6CP015441 | TssI | N454_00612 (tssI-3) | 12050..12898 | - | 849 | 574093467 | TssI |
| T6CP015442 | TagE | N454_00613 (tagE) | 14187..15650 | - | 1464 | 574093468 | TagE |
| T6CP015443 | TssH | N454_00614 (tssH) | 15680..18298 | - | 2619 | 574093469 | TssH |
| T6CP015444 | TssG | N454_00615 (tssG) | 18352..19401 | - | 1050 | 574093470 | TssG |
| T6CP015445 | TssF | N454_00616 (tssF) | 19398..21275 | - | 1878 | 574093471 | TssF |
| T6CP015446 | TssE | N454_00617 (tssE) | 21278..21853 | - | 576 | 574093477 | TssE |
| T6CP015447 | TagJ | N454_00618 (tagJ) | 21843..22670 | - | 828 | 574093472 | TagJ |
| N454_00619 (atxM) | 22687..23763 | - | 1077 | 574093473 | AtxM | ||
| T6CP015448 | TagG | N454_00620 (tagG) | 23732..24523 | - | 792 | 574093474 | TagG |
| T6CP015449 | TagH | N454_00621 (tagH) | 24520..26415 | - | 1896 | 574093475 | TagH |
| N454_00622 (agxN) | 26549..26950 | - | 402 | 574093476 | AgxN | ||
| N454_00623 (agxL) | 27045..27596 | - | 552 | 574093478 | AgxL | ||
| N454_00624 (agxO) | 28192..29001 | - | 810 | 574093479 | AgxO | ||
| N454_00625 (agxP) | 29055..29453 | - | 399 | 574093480 | AgxP | ||
| N454_00626 (agxX) | 29512..30084 | - | 573 | 574093481 | AgxX | ||
| N454_00627 (agxQ) | 30093..30506 | - | 414 | 574093482 | AgxQ | ||
| N454_00628 (agxR) | 30503..31495 | - | 993 | 574093483 | AgxR | ||
| T6CP015450 | TssD | N454_00629 (tssD) | 31609..32091 | - | 483 | 574093484 | TssD |
| T6CP015451 | TssC | N454_00630 (tssC) | 32671..34170 | - | 1500 | 574093485 | TssC |
| T6CP015452 | TssB | N454_00631 (tssB) | 34170..34712 | - | 543 | 574093486 | TssB |
| T6CP015453 | TssA | N454_00632 (tssA) | 34781..35803 | - | 1023 | 574093487 | TssA |
| T6CP015454 | TagF | N454_00633 (tagF) | 35814..36527 | - | 714 | 574093488 | TagF |
| T6CP015455 | TssM | N454_00634 (tssM) | 36542..40168 | - | 3627 | 574093489 | TssM |
| T6CP015456 | TssL | N454_00635 (tssL) | 40172..41413 | - | 1242 | 574093490 | TssL |
| T6CP015457 | TssK | N454_00636 (tssK) | 41430..42776 | - | 1347 | 574093491 | TssK |
| T6CP015458 | TssJ | N454_00637 (tssJ) | 42792..43295 | - | 504 | 574093492 | TssJ |
| N454_00638 (agxY) | 43319..43918 | - | 600 | 574093493 | AgxY | ||
| N454_00639 (matE) | 45028..46467 | - | 1440 | 574093494 | MatE |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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