Detailed information of component protein


Summary

Component ID T6CP015439
Component protein type TssI
T6SS ID (Type) T6SS01222 experimental (Type i3)
Strain Pantoea ananatis LMG 2665
Replicon chromosome
Sequence Protein sequence (436 a.a.); Nucleotide sequence (1308 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) N454_00608
Coordinate (Strand) 9267..10574 (-)
NCBI ID 574093463
GenBank KF590027
Uniprot ID W8DW19_PANAN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Glucosaminidase PF01832.22 1.9e-14 292..418
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-435 MGFLSRSKDGTADTANALRFEDKAGEEHLWIQAQKNMDTHVKNDSSHSVANNHSHYAGGNELYRVETNRVHGVKGGEERLTGQGKIDNVVETYVLGSGTKLRLECGESAIELNANGHINIVGKGFNLFVNGDGHITTSGGKLNLNTSGAQPGTGAPGAGHKGNINQAVVNLFPPKQKGQAAPAAPKAAAAPAKATAAPLANSGDKKSKYNYTVDEMVKKQKGLKAKPVKWDNATKGFVPATEEDIKKYVDPANHMEGKDKYQFVDLSSSSGISKDEMSNFLKDKGTLAGQEQTYLDAAKKYNVNEAYLAAHSALETGNGTSELAKGVMVNGTKVYNMYGIGALDGNAVQTGANYAYKQGWTTPAKAIDGGAKWISDKFVGSGQNTLYKMRWNPASPGTHQYATDVNWATAQTTSMKKMFDSFPNANLSYDVPEYN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9754 - -


  Protein sequence: 436 a.a.    

>T6CP015439 KF590027:c10574-9267 [Pantoea ananatis LMG 2665] [TssI]
MGFLSRSKDGTADTANALRFEDKAGEEHLWIQAQKNMDTHVKNDSSHSVANNHSHYAGGNELYRVETNRVHGVKGGEERL
TGQGKIDNVVETYVLGSGTKLRLECGESAIELNANGHINIVGKGFNLFVNGDGHITTSGGKLNLNTSGAQPGTGAPGAGH
KGNINQAVVNLFPPKQKGQAAPAAPKAAAAPAKATAAPLANSGDKKSKYNYTVDEMVKKQKGLKAKPVKWDNATKGFVPA
TEEDIKKYVDPANHMEGKDKYQFVDLSSSSGISKDEMSNFLKDKGTLAGQEQTYLDAAKKYNVNEAYLAAHSALETGNGT
SELAKGVMVNGTKVYNMYGIGALDGNAVQTGANYAYKQGWTTPAKAIDGGAKWISDKFVGSGQNTLYKMRWNPASPGTHQ
YATDVNWATAQTTSMKKMFDSFPNANLSYDVPEYN*

  Nucleotide sequence: 1308 bp    

>T6CP015439 KF590027:c10574-9267 [Pantoea ananatis LMG 2665] [TssI]
ATGGGCTTTCTGAGTCGCTCGAAAGACGGCACTGCGGATACCGCGAACGCATTACGCTTTGAGGATAAGGCGGGCGAGGA
GCATTTGTGGATCCAGGCGCAGAAGAACATGGATACGCATGTTAAAAATGATTCCAGCCATTCCGTTGCCAACAACCACA
GCCACTATGCAGGCGGTAACGAACTCTATCGGGTTGAAACCAACCGCGTGCATGGTGTTAAAGGTGGCGAAGAGCGTTTA
ACGGGACAAGGAAAAATCGACAACGTTGTCGAAACCTACGTTCTTGGGTCAGGAACTAAGTTACGCCTTGAATGCGGCGA
AAGTGCTATCGAACTCAATGCTAATGGTCATATCAATATTGTCGGTAAGGGCTTCAATCTTTTTGTTAACGGTGATGGAC
ACATCACTACATCAGGCGGAAAACTCAATTTAAATACATCCGGTGCGCAGCCGGGTACGGGGGCACCTGGTGCTGGCCAC
AAAGGCAACATCAATCAGGCCGTTGTGAATCTTTTCCCCCCAAAGCAAAAGGGGCAGGCGGCCCCGGCAGCACCTAAAGC
TGCGGCAGCACCTGCAAAAGCAACCGCTGCACCGTTAGCAAATTCTGGGGACAAGAAGAGTAAATATAACTACACGGTTG
ATGAGATGGTTAAAAAACAAAAGGGGCTGAAAGCAAAGCCAGTTAAATGGGATAACGCGACGAAAGGTTTTGTACCCGCA
ACAGAGGAAGATATTAAGAAATATGTCGATCCTGCTAACCATATGGAAGGTAAAGACAAATATCAATTTGTTGATCTTTC
TTCCTCATCTGGGATTAGTAAAGATGAGATGAGCAACTTTCTTAAAGATAAGGGCACGCTTGCTGGTCAGGAACAGACTT
ACCTGGATGCGGCAAAAAAATACAATGTCAATGAGGCTTACCTCGCAGCGCATTCCGCGCTGGAGACGGGAAATGGCACC
AGTGAGTTGGCCAAAGGCGTGATGGTCAATGGAACTAAAGTTTATAATATGTATGGCATTGGAGCGCTGGATGGAAATGC
TGTACAAACCGGTGCTAACTATGCCTACAAACAAGGGTGGACAACTCCGGCGAAGGCCATTGATGGCGGCGCAAAATGGA
TATCTGATAAGTTTGTTGGCTCTGGCCAGAATACTTTGTATAAAATGCGCTGGAATCCGGCCTCACCGGGAACGCACCAG
TATGCCACAGATGTCAACTGGGCAACGGCTCAGACAACCAGCATGAAAAAAATGTTCGACAGCTTTCCAAATGCGAATCT
TTCTTATGACGTGCCTGAGTATAATTAA