Detailed information of component protein
Summary
| Component ID | T6CP015448 |
| Component protein type | TagG |
| T6SS ID (Type) | T6SS01222  (Type i3) |
| Strain | Pantoea ananatis LMG 2665 |
| Replicon | chromosome |
| Sequence | Protein sequence (264 a.a.); Nucleotide sequence (792 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | N454_00620 |
| Coordinate (Strand) | 23732..24523 (-) |
| NCBI ID | 574093474 |
| GenBank | KF590027 |
| Uniprot ID | W8DVM5_PANAN |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| PP2C_2 | PF13672.8 | 2.8e-13 | 8..227 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-263 | MNISTASTSNQGDRASNQDQTGESIGERSACFVVCDGVAGFPGGDVAAKIARSSLMEAFDGNAHLDAQTIRDYVNYANGAIRQQQKANSQHSRMGTTLVSLFIDRDYELAYWAHAGDSRLYLFRRGYLYHVTTDHSLIQQMKDAGHQTEGINSNLLYFALGMGDEQRDASYSDVVPIEDGDAFLLCTDGFWHGVTLEQMQQSLHMVNTPEEWLTLMQQIIKNSQPQGGQQDNFSAMAVWVGSPEDTTLLHSLSDAAQFFPLRD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9276 | - | - |
Protein sequence: 264 a.a.
>T6CP015448 KF590027:c24523-23732 [Pantoea ananatis LMG 2665] [TagG]
MNISTASTSNQGDRASNQDQTGESIGERSACFVVCDGVAGFPGGDVAAKIARSSLMEAFDGNAHLDAQTIRDYVNYANGA
IRQQQKANSQHSRMGTTLVSLFIDRDYELAYWAHAGDSRLYLFRRGYLYHVTTDHSLIQQMKDAGHQTEGINSNLLYFAL
GMGDEQRDASYSDVVPIEDGDAFLLCTDGFWHGVTLEQMQQSLHMVNTPEEWLTLMQQIIKNSQPQGGQQDNFSAMAVWV
GSPEDTTLLHSLSDAAQFFPLRD*
MNISTASTSNQGDRASNQDQTGESIGERSACFVVCDGVAGFPGGDVAAKIARSSLMEAFDGNAHLDAQTIRDYVNYANGA
IRQQQKANSQHSRMGTTLVSLFIDRDYELAYWAHAGDSRLYLFRRGYLYHVTTDHSLIQQMKDAGHQTEGINSNLLYFAL
GMGDEQRDASYSDVVPIEDGDAFLLCTDGFWHGVTLEQMQQSLHMVNTPEEWLTLMQQIIKNSQPQGGQQDNFSAMAVWV
GSPEDTTLLHSLSDAAQFFPLRD*
Nucleotide sequence: 792 bp
>T6CP015448 KF590027:c24523-23732 [Pantoea ananatis LMG 2665] [TagG]
ATGAATATCTCTACTGCTTCCACGTCGAATCAGGGCGACCGCGCCAGCAATCAGGATCAAACCGGTGAGAGCATCGGCGA
GCGTTCGGCTTGCTTTGTGGTGTGTGATGGTGTGGCAGGGTTTCCCGGCGGTGACGTGGCAGCAAAAATTGCACGCAGTA
GCCTGATGGAAGCCTTTGATGGCAATGCGCATCTCGATGCGCAAACCATTCGCGATTACGTGAATTATGCCAATGGCGCC
ATTCGGCAACAGCAAAAGGCAAACAGTCAGCACAGCCGGATGGGCACCACGCTGGTGAGTTTGTTTATCGACAGAGACTA
TGAACTGGCCTACTGGGCGCATGCAGGCGACAGTCGGCTTTACCTGTTTCGTCGGGGCTATCTCTACCACGTGACCACAG
ACCACAGCCTGATTCAGCAAATGAAAGATGCCGGGCACCAGACAGAAGGCATTAACAGTAACCTGCTCTATTTTGCATTA
GGCATGGGCGATGAACAGCGGGATGCCAGTTACAGCGATGTGGTGCCTATTGAGGATGGGGATGCCTTTTTGCTGTGTAC
GGATGGTTTCTGGCATGGCGTGACGCTGGAACAAATGCAGCAATCATTGCATATGGTGAATACGCCAGAAGAGTGGCTGA
CCCTGATGCAACAAATTATCAAAAACAGCCAACCGCAGGGGGGTCAACAGGACAACTTCAGCGCCATGGCTGTGTGGGTA
GGTTCACCAGAAGACACCACCTTATTGCACTCGCTGTCTGATGCGGCGCAGTTTTTCCCTCTTCGAGATTGA
ATGAATATCTCTACTGCTTCCACGTCGAATCAGGGCGACCGCGCCAGCAATCAGGATCAAACCGGTGAGAGCATCGGCGA
GCGTTCGGCTTGCTTTGTGGTGTGTGATGGTGTGGCAGGGTTTCCCGGCGGTGACGTGGCAGCAAAAATTGCACGCAGTA
GCCTGATGGAAGCCTTTGATGGCAATGCGCATCTCGATGCGCAAACCATTCGCGATTACGTGAATTATGCCAATGGCGCC
ATTCGGCAACAGCAAAAGGCAAACAGTCAGCACAGCCGGATGGGCACCACGCTGGTGAGTTTGTTTATCGACAGAGACTA
TGAACTGGCCTACTGGGCGCATGCAGGCGACAGTCGGCTTTACCTGTTTCGTCGGGGCTATCTCTACCACGTGACCACAG
ACCACAGCCTGATTCAGCAAATGAAAGATGCCGGGCACCAGACAGAAGGCATTAACAGTAACCTGCTCTATTTTGCATTA
GGCATGGGCGATGAACAGCGGGATGCCAGTTACAGCGATGTGGTGCCTATTGAGGATGGGGATGCCTTTTTGCTGTGTAC
GGATGGTTTCTGGCATGGCGTGACGCTGGAACAAATGCAGCAATCATTGCATATGGTGAATACGCCAGAAGAGTGGCTGA
CCCTGATGCAACAAATTATCAAAAACAGCCAACCGCAGGGGGGTCAACAGGACAACTTCAGCGCCATGGCTGTGTGGGTA
GGTTCACCAGAAGACACCACCTTATTGCACTCGCTGTCTGATGCGGCGCAGTTTTTCCCTCTTCGAGATTGA