Detailed information of component protein


Summary

Component ID T6CP015445
Component protein type TssF
T6SS ID (Type) T6SS01222 experimental (Type i3)
Strain Pantoea ananatis LMG 2665
Replicon chromosome
Sequence Protein sequence (626 a.a.); Nucleotide sequence (1878 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) N454_00616
Coordinate (Strand) 19398..21275 (-)
NCBI ID 574093471
GenBank KF590027
Uniprot ID W8DUD7_PANAN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.1e-221 1..622
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-625 MDSKLLDYYNRELAYLREMGAEFAAQYPKVAGRLGMRGIDVADPYVERLMEGFAFLTSRVQLKMDAEFPRFSQRMLEMVAPGYLSPTPSMAIAQLTPDSRKGDISNGFLVPRGTMMESQNLKKTGVTCSYTTAHDVMLQPLRISDVSLGGVPADIPLGELKAGGSTAASSALRIRITCEGISSLSQLSLDDVMFFLSGPDIQALKLMELLMQHRVGIILQSVEAKPQRQILPDDALQQEGFSTEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLRQLSPFLQRCDNALSFDIVILLDKADAALESVVDIAHLALHCTPVINLFPKTAERLKVSDSQHEYHLVVDNIRPLDYEIHSVKRLFASVEGQREEQIFRPFWSTFSHDGGDYGAYFSLRREQRTLSEHALRYGTRTGYIGSEVFLSLVDQNHTPWNSDIRYLSAEVMCTSRDLPLMLLQQEQANFVMPDSIPVGQLKLCKGPTPPRPALAEGLSAWRLISHLQMNYLSLMDSSDGEGAAALRQMLSLYASLAETPLTRQIDGIRHCNLKAVHRRVPEPGPVVFARGVSIALEVDEQAFSGASPWLFGSVLERVFSRLVALNSFTEFTLSSQQRGEVGYWPPRMGKKALL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -


  Protein sequence: 626 a.a.    

>T6CP015445 KF590027:c21275-19398 [Pantoea ananatis LMG 2665] [TssF]
MDSKLLDYYNRELAYLREMGAEFAAQYPKVAGRLGMRGIDVADPYVERLMEGFAFLTSRVQLKMDAEFPRFSQRMLEMVA
PGYLSPTPSMAIAQLTPDSRKGDISNGFLVPRGTMMESQNLKKTGVTCSYTTAHDVMLQPLRISDVSLGGVPADIPLGEL
KAGGSTAASSALRIRITCEGISSLSQLSLDDVMFFLSGPDIQALKLMELLMQHRVGIILQSVEAKPQRQILPDDALQQEG
FSTEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLRQLSPFLQRCDNALSFDIVILLDKADAALESVVDIAHLALHCTP
VINLFPKTAERLKVSDSQHEYHLVVDNIRPLDYEIHSVKRLFASVEGQREEQIFRPFWSTFSHDGGDYGAYFSLRREQRT
LSEHALRYGTRTGYIGSEVFLSLVDQNHTPWNSDIRYLSAEVMCTSRDLPLMLLQQEQANFVMPDSIPVGQLKLCKGPTP
PRPALAEGLSAWRLISHLQMNYLSLMDSSDGEGAAALRQMLSLYASLAETPLTRQIDGIRHCNLKAVHRRVPEPGPVVFA
RGVSIALEVDEQAFSGASPWLFGSVLERVFSRLVALNSFTEFTLSSQQRGEVGYWPPRMGKKALL*

  Nucleotide sequence: 1878 bp    

>T6CP015445 KF590027:c21275-19398 [Pantoea ananatis LMG 2665] [TssF]
ATGGACAGCAAGCTGCTTGATTACTACAACCGTGAACTGGCCTATCTGCGCGAGATGGGCGCGGAGTTTGCTGCCCAGTA
TCCTAAGGTCGCCGGGCGGCTTGGTATGCGCGGCATTGACGTCGCCGATCCTTATGTCGAAAGACTTATGGAGGGTTTCG
CGTTTCTGACCTCACGCGTACAGTTAAAGATGGATGCCGAGTTTCCACGCTTTTCTCAGCGGATGCTGGAAATGGTGGCA
CCGGGCTACCTTTCACCTACGCCGTCGATGGCCATCGCCCAGCTCACGCCAGACAGCCGCAAAGGCGATATCAGCAACGG
TTTCCTGGTGCCGCGCGGCACAATGATGGAAAGCCAGAACCTGAAAAAAACGGGCGTCACCTGCAGCTATACCACCGCGC
ACGATGTGATGTTACAGCCCCTGCGCATCAGCGATGTGTCATTAGGTGGCGTGCCGGCGGATATCCCGTTAGGCGAGTTG
AAAGCGGGCGGTTCGACGGCGGCGTCCAGCGCCCTCCGTATCCGCATCACCTGCGAAGGCATTTCATCGTTAAGCCAGCT
CAGTCTCGATGACGTGATGTTTTTCCTGAGCGGACCCGATATTCAGGCCCTGAAACTGATGGAGCTGCTGATGCAGCATC
GCGTCGGAATCATCCTGCAGTCCGTGGAAGCAAAACCGCAACGTCAGATTCTGCCGGATGACGCGCTTCAGCAGGAAGGC
TTTTCGACTGAGCAGGCCCTGCTGCCCGACGATCTGCGTAATTTTGACGGCTACCGCCTGCTGCAGGAGTATTTTGCATT
CCCGGCACGCTTCCAGTTTATCAGCCTGCGTCAGCTGTCGCCTTTCCTGCAGCGCTGCGATAACGCCCTGTCGTTTGACA
TCGTCATCTTGCTGGATAAGGCCGATGCGGCGCTGGAAAGCGTTGTCGACATCGCCCATCTGGCCCTGCACTGCACGCCG
GTCATTAACCTGTTCCCGAAAACCGCCGAGCGGCTTAAGGTCAGCGACAGTCAGCACGAGTATCACCTGGTGGTCGATAA
TATTCGTCCGCTGGACTATGAGATCCATTCGGTGAAGCGCTTGTTTGCCTCTGTCGAAGGACAGCGCGAAGAGCAGATCT
TCCGGCCGTTCTGGAGCACCTTCAGCCATGACGGCGGGGATTATGGCGCGTATTTCTCCCTGCGTCGTGAACAGCGCACG
CTCTCTGAGCACGCGTTGCGCTATGGCACCCGAACAGGCTATATCGGTTCTGAAGTGTTTCTCTCCCTGGTGGATCAAAA
TCATACGCCGTGGAACAGCGATATCCGCTACTTGTCTGCGGAAGTGATGTGCACCAGCCGTGACCTGCCTTTAATGCTGC
TACAGCAAGAGCAGGCCAACTTTGTAATGCCGGATTCCATTCCTGTCGGGCAACTTAAATTGTGCAAAGGCCCGACGCCA
CCGCGTCCGGCGCTGGCTGAAGGGCTTTCAGCATGGCGACTCATCAGTCATCTTCAGATGAACTATCTGAGCCTGATGGA
CAGCAGCGATGGCGAAGGGGCTGCGGCACTGCGCCAGATGCTGAGCCTGTATGCCAGCCTGGCCGAAACGCCGCTAACGC
GTCAGATTGACGGAATTCGGCACTGCAACCTCAAAGCCGTTCACCGCCGGGTGCCAGAGCCGGGCCCCGTGGTGTTTGCG
CGCGGGGTCAGCATTGCGCTTGAGGTAGATGAGCAGGCGTTTTCCGGTGCCAGCCCCTGGCTGTTCGGCAGCGTGCTGGA
GCGGGTCTTTTCTCGCCTTGTGGCGCTTAACAGCTTTACCGAATTCACCCTGAGCAGCCAGCAGCGCGGCGAAGTGGGCT
ACTGGCCGCCGCGCATGGGCAAAAAGGCGCTGCTATGA