Detailed information of component protein


Summary

Component ID T6CP015455
Component protein type TssM
T6SS ID (Type) T6SS01222 experimental (Type i3)
Strain Pantoea ananatis LMG 2665
Replicon chromosome
Sequence Protein sequence (1209 a.a.); Nucleotide sequence (3627 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) N454_00634
Coordinate (Strand) 36542..40168 (-)
NCBI ID 574093489
GenBank KF590027
Uniprot ID W8DVN6_PANAN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 2.3e-91 210..483
IcmF-related PF06761.14 9.4e-81 536..839
IcmF_C PF06744.14 1.4e-22 1092..1195
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MLNVLFAVLTSR
Transmembrane helix 13-34 LAWGFVGITALSFIIWVIGPVF
Outside 35-48 SIVDSRPLESEQNR
Transmembrane helix 49-71 VISIALLYVVWGLSQAIPRVYNY
Inside 72-476 WLNRKLMSSLETSKSDTPEEDRKRLTSEDQVLASRFSEATEMLKKAHFQRQSSKGAPFWAQRFSHQYLYQLPWYMIIGAPGAGKTTALVNSGLQFPLADKFGKAALRGIGGTRNCDWWFTNEAVLLDTAGRYTTQESQQERDAGEWHQFLELLRKYRGRQPVNGVIVTLSVADLLSQSPEAMRNQAVALRQRLMELHDRLGIRFPVYVLVTKTDLLKGFRSYFASLDKAQREQIWGFTFPWAKASTAEFELSSQFQQEYSLLQQRLDAGLADVLLAESDAQARAESYLFPQEFAALRPQLAEALDILFARSDFETQFAPRGIYFASGTQEGLPFDRVMGELTRALHLPGQQQSESGSWDKVDKDAPIPQNKGQSFFLKGVLENVIFQESGLAGSNRWWELRNRVG
Transmembrane helix 477-499 LWSGYLALLVIVLIAGALWLVSY
Outside 500-1208 NKNKTYLQEMAAKSPQVEQLGDKLQKEVNGNLFALVPYLNTLLHLPESASFSLEHPPLTRRMGLYRGTEVSDATQALYERALKQLLMPQVAQNITRWLRNDTGSDADYSYEALKAYQMLYQPKHYDGKFLQAWMMLNISRELPQDVTQAEVKQLAWHLQQLLETQIQSSPYAKDDALVKREQALISQMPLSQRVYGRLKRLLERDGSMSPVTLSALGGPQSELVFSRKSGKSVNEGVSGLFTPDGYWNHVDKQIAPVTDALYKDDIWVLGAETAHEDGKQTDLAVRQLYIQDYIRQWEQFLSDIQLNSSADLTQRINTARLLSGNHSPLRQLVINLSKQLTLTRAQPEDKNAKDTAASSDNSATRTLQALFTSPRANGEQAVVQQTPEQAVTAHFAPVIELAQPLQQGSKVLAVDDFLKQIDDLYRYLTAVQDAANSGMPPPASDAISRLQASAGRLPGSLQNMVSGMAVGASSDAQRRDMDNVRKRITMEVGSFCRQAIAGRYPLVRNARSEVTPDDLARMFAPGTGLMDSFFRDNLASKVDTTRAAWRFTPGIDGKTLPGGEALLRPFQQAQSIRDAFFANGATTPSFRVTLRTVKMDNDILNMTLDVDGQILRYSHGPQAVQLVSWPGPGGTSQVRMQLGLTNGTTSTLTTSGPWALNRFFDRARVTSVGGLTREASFSVDGHNVTLSFTPGSIRNPFQLPAFSCP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9936 - -


  Protein sequence: 1209 a.a.    

>T6CP015455 KF590027:c40168-36542 [Pantoea ananatis LMG 2665] [TssM]
MLNVLFAVLTSRLAWGFVGITALSFIIWVIGPVFSIVDSRPLESEQNRVISIALLYVVWGLSQAIPRVYNYWLNRKLMSS
LETSKSDTPEEDRKRLTSEDQVLASRFSEATEMLKKAHFQRQSSKGAPFWAQRFSHQYLYQLPWYMIIGAPGAGKTTALV
NSGLQFPLADKFGKAALRGIGGTRNCDWWFTNEAVLLDTAGRYTTQESQQERDAGEWHQFLELLRKYRGRQPVNGVIVTL
SVADLLSQSPEAMRNQAVALRQRLMELHDRLGIRFPVYVLVTKTDLLKGFRSYFASLDKAQREQIWGFTFPWAKASTAEF
ELSSQFQQEYSLLQQRLDAGLADVLLAESDAQARAESYLFPQEFAALRPQLAEALDILFARSDFETQFAPRGIYFASGTQ
EGLPFDRVMGELTRALHLPGQQQSESGSWDKVDKDAPIPQNKGQSFFLKGVLENVIFQESGLAGSNRWWELRNRVGLWSG
YLALLVIVLIAGALWLVSYNKNKTYLQEMAAKSPQVEQLGDKLQKEVNGNLFALVPYLNTLLHLPESASFSLEHPPLTRR
MGLYRGTEVSDATQALYERALKQLLMPQVAQNITRWLRNDTGSDADYSYEALKAYQMLYQPKHYDGKFLQAWMMLNISRE
LPQDVTQAEVKQLAWHLQQLLETQIQSSPYAKDDALVKREQALISQMPLSQRVYGRLKRLLERDGSMSPVTLSALGGPQS
ELVFSRKSGKSVNEGVSGLFTPDGYWNHVDKQIAPVTDALYKDDIWVLGAETAHEDGKQTDLAVRQLYIQDYIRQWEQFL
SDIQLNSSADLTQRINTARLLSGNHSPLRQLVINLSKQLTLTRAQPEDKNAKDTAASSDNSATRTLQALFTSPRANGEQA
VVQQTPEQAVTAHFAPVIELAQPLQQGSKVLAVDDFLKQIDDLYRYLTAVQDAANSGMPPPASDAISRLQASAGRLPGSL
QNMVSGMAVGASSDAQRRDMDNVRKRITMEVGSFCRQAIAGRYPLVRNARSEVTPDDLARMFAPGTGLMDSFFRDNLASK
VDTTRAAWRFTPGIDGKTLPGGEALLRPFQQAQSIRDAFFANGATTPSFRVTLRTVKMDNDILNMTLDVDGQILRYSHGP
QAVQLVSWPGPGGTSQVRMQLGLTNGTTSTLTTSGPWALNRFFDRARVTSVGGLTREASFSVDGHNVTLSFTPGSIRNPF
QLPAFSCP*

  Nucleotide sequence: 3627 bp    

>T6CP015455 KF590027:c40168-36542 [Pantoea ananatis LMG 2665] [TssM]
ATGCTGAATGTACTATTTGCGGTACTGACCAGCCGTCTGGCCTGGGGCTTTGTCGGTATCACCGCACTTTCGTTTATTAT
CTGGGTCATTGGCCCGGTGTTCTCGATTGTGGACTCCCGTCCGTTGGAGTCAGAACAGAACCGCGTAATCAGTATTGCGC
TGCTCTATGTTGTCTGGGGCCTGAGCCAGGCGATTCCGCGTGTCTATAACTACTGGCTCAACCGTAAGCTGATGTCCAGC
CTGGAAACCAGCAAATCGGATACGCCGGAAGAAGACCGCAAGCGACTGACCAGTGAAGATCAGGTGCTGGCCAGCCGCTT
CTCTGAAGCGACTGAGATGCTGAAAAAAGCACACTTCCAGCGGCAGAGCAGCAAAGGTGCGCCTTTCTGGGCGCAGCGCT
TCAGTCATCAATATCTCTATCAACTGCCTTGGTACATGATCATCGGCGCGCCAGGTGCCGGTAAAACCACCGCTCTGGTG
AATTCTGGCTTGCAGTTCCCACTGGCGGACAAGTTCGGTAAGGCTGCGCTACGTGGGATCGGCGGGACGCGTAACTGTGA
CTGGTGGTTTACTAACGAAGCCGTGCTGCTGGATACGGCGGGGCGCTATACCACGCAGGAGAGCCAGCAGGAGCGCGATG
CCGGCGAATGGCATCAGTTTCTCGAACTCCTGCGTAAATACCGTGGCCGTCAGCCGGTTAACGGCGTCATCGTCACCTTG
AGCGTGGCAGACCTGTTATCACAGTCGCCCGAGGCCATGCGCAATCAGGCCGTGGCGCTGCGCCAGCGTCTGATGGAGTT
ACACGATCGGCTCGGTATTCGCTTTCCGGTGTATGTCCTGGTCACCAAAACCGACCTGTTAAAGGGGTTCCGCAGCTATT
TTGCCAGCCTGGATAAGGCACAGCGCGAGCAGATTTGGGGTTTTACCTTTCCGTGGGCCAAAGCATCAACGGCTGAATTT
GAACTCAGCAGCCAGTTTCAGCAGGAATATTCGCTGCTGCAGCAGCGCCTGGATGCCGGACTGGCCGATGTACTGCTGGC
GGAAAGTGATGCCCAGGCACGTGCCGAAAGCTACCTGTTTCCACAGGAGTTTGCGGCATTGCGCCCTCAGTTGGCTGAGG
CGCTGGATATTCTGTTTGCGCGTTCCGATTTCGAAACGCAGTTCGCCCCGCGCGGCATCTACTTTGCCAGCGGTACGCAG
GAAGGCTTACCCTTTGACCGCGTAATGGGTGAACTCACGCGCGCCCTGCATCTGCCAGGCCAGCAGCAGAGTGAGTCGGG
CAGTTGGGACAAAGTGGATAAAGACGCGCCGATCCCTCAAAACAAAGGGCAGAGCTTTTTCCTTAAGGGCGTGCTGGAAA
ATGTCATCTTCCAGGAGTCCGGTCTGGCCGGCAGTAACCGCTGGTGGGAGCTACGTAACCGCGTGGGCCTGTGGTCGGGT
TATCTGGCGTTACTGGTTATCGTACTCATTGCCGGTGCACTGTGGCTGGTGAGCTATAACAAAAACAAAACCTACCTGCA
GGAGATGGCGGCGAAAAGCCCCCAGGTCGAGCAGCTCGGTGACAAGTTACAAAAAGAGGTGAACGGCAACCTCTTTGCAC
TGGTGCCTTACCTCAATACGCTGCTGCACCTGCCTGAAAGCGCCTCCTTTTCTCTGGAGCATCCGCCGCTCACGCGCCGG
ATGGGGCTGTATCGCGGAACGGAAGTCAGTGATGCGACCCAGGCCTTGTACGAAAGGGCGCTGAAACAGCTGCTGATGCC
GCAGGTTGCGCAGAATATCACCCGCTGGTTACGCAATGATACGGGAAGTGACGCTGACTACAGCTATGAGGCGCTTAAGG
CTTATCAGATGCTGTACCAGCCAAAACACTATGACGGTAAGTTTCTTCAGGCGTGGATGATGTTAAACATCTCACGTGAA
TTGCCGCAGGACGTGACTCAGGCTGAGGTGAAACAGCTGGCGTGGCACCTGCAACAGCTACTGGAAACGCAGATTCAGTC
CTCGCCCTATGCGAAGGATGATGCGCTGGTAAAGCGCGAGCAGGCGCTGATTAGTCAGATGCCGCTGTCACAGCGCGTTT
ACGGACGCCTGAAACGCCTGCTGGAACGCGATGGCTCAATGTCACCGGTTACCTTGTCCGCGCTGGGTGGACCGCAAAGT
GAACTGGTGTTTTCCCGTAAAAGCGGTAAGTCTGTCAATGAAGGTGTTTCCGGGCTCTTTACGCCAGACGGCTACTGGAA
CCATGTGGATAAACAGATCGCGCCGGTCACGGATGCGCTCTACAAAGACGATATCTGGGTGCTGGGTGCAGAGACGGCCC
ATGAAGACGGCAAACAAACCGACCTTGCGGTGCGCCAGCTCTATATTCAGGATTACATCCGCCAGTGGGAGCAGTTTCTC
AGCGATATTCAACTCAACAGCAGCGCCGATTTGACCCAACGTATTAATACGGCGCGCCTGCTGTCAGGGAATCATTCGCC
GCTGCGGCAGTTAGTGATTAACCTGAGCAAACAGCTCACGCTCACCCGGGCGCAGCCTGAAGACAAGAATGCCAAAGATA
CGGCCGCGTCATCGGATAACAGCGCCACACGAACGCTGCAGGCACTGTTTACCTCGCCGCGCGCAAACGGCGAGCAGGCG
GTGGTGCAGCAAACGCCCGAGCAGGCGGTGACCGCGCACTTTGCACCTGTCATCGAGCTGGCACAGCCGTTACAGCAGGG
CAGTAAGGTCCTGGCCGTTGATGATTTTCTTAAGCAGATCGACGATCTCTATCGCTATCTCACTGCCGTGCAGGATGCCG
CGAATAGCGGTATGCCACCGCCGGCGAGTGATGCCATTAGCCGTTTGCAGGCCAGCGCCGGACGTTTGCCCGGTTCACTG
CAAAATATGGTGTCAGGCATGGCAGTGGGCGCCAGCAGCGATGCACAGCGTCGCGACATGGATAACGTTCGCAAGCGCAT
CACCATGGAAGTCGGCAGCTTCTGCCGTCAGGCGATAGCAGGCCGTTACCCGCTGGTCCGGAATGCACGCAGCGAAGTCA
CGCCTGATGACCTGGCGCGCATGTTTGCGCCGGGAACCGGACTGATGGACAGCTTCTTCCGCGATAATCTGGCCAGCAAA
GTGGATACCACGCGCGCGGCATGGCGCTTCACGCCCGGCATTGATGGCAAAACCTTGCCAGGTGGCGAAGCCTTGCTGCG
TCCTTTCCAGCAGGCGCAGTCGATTCGCGACGCCTTCTTTGCCAATGGGGCCACTACGCCATCCTTCCGCGTCACGTTAC
GGACGGTGAAGATGGATAACGATATCCTGAATATGACGCTGGATGTCGATGGACAGATTTTGCGCTACAGTCATGGACCA
CAGGCAGTGCAGTTAGTGAGTTGGCCCGGACCAGGTGGAACCAGTCAGGTGCGCATGCAACTGGGGCTAACGAACGGCAC
GACCTCAACCCTGACCACCAGCGGCCCATGGGCGCTTAATCGCTTCTTTGATCGCGCACGGGTGACGTCGGTAGGTGGAC
TGACTCGCGAAGCCAGCTTTAGTGTGGACGGCCATAATGTGACGCTGTCATTCACGCCAGGCAGCATTCGTAATCCTTTC
CAGCTACCCGCATTTAGCTGTCCCTGA