Detailed information of component protein
Summary
| Component ID | T6CP015455 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS01222  (Type i3) |
| Strain | Pantoea ananatis LMG 2665 |
| Replicon | chromosome |
| Sequence | Protein sequence (1209 a.a.); Nucleotide sequence (3627 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 36542..40168 (-) |
| NCBI ID | 574093489 |
| GenBank | KF590027 |
| Uniprot ID | W8DVN6_PANAN |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-12 | MLNVLFAVLTSR |
| Transmembrane helix | 13-34 | LAWGFVGITALSFIIWVIGPVF |
| Outside | 35-48 | SIVDSRPLESEQNR |
| Transmembrane helix | 49-71 | VISIALLYVVWGLSQAIPRVYNY |
| Inside | 72-476 | WLNRKLMSSLETSKSDTPEEDRKRLTSEDQVLASRFSEATEMLKKAHFQRQSSKGAPFWAQRFSHQYLYQLPWYMIIGAPGAGKTTALVNSGLQFPLADKFGKAALRGIGGTRNCDWWFTNEAVLLDTAGRYTTQESQQERDAGEWHQFLELLRKYRGRQPVNGVIVTLSVADLLSQSPEAMRNQAVALRQRLMELHDRLGIRFPVYVLVTKTDLLKGFRSYFASLDKAQREQIWGFTFPWAKASTAEFELSSQFQQEYSLLQQRLDAGLADVLLAESDAQARAESYLFPQEFAALRPQLAEALDILFARSDFETQFAPRGIYFASGTQEGLPFDRVMGELTRALHLPGQQQSESGSWDKVDKDAPIPQNKGQSFFLKGVLENVIFQESGLAGSNRWWELRNRVG |
| Transmembrane helix | 477-499 | LWSGYLALLVIVLIAGALWLVSY |
| Outside | 500-1208 | NKNKTYLQEMAAKSPQVEQLGDKLQKEVNGNLFALVPYLNTLLHLPESASFSLEHPPLTRRMGLYRGTEVSDATQALYERALKQLLMPQVAQNITRWLRNDTGSDADYSYEALKAYQMLYQPKHYDGKFLQAWMMLNISRELPQDVTQAEVKQLAWHLQQLLETQIQSSPYAKDDALVKREQALISQMPLSQRVYGRLKRLLERDGSMSPVTLSALGGPQSELVFSRKSGKSVNEGVSGLFTPDGYWNHVDKQIAPVTDALYKDDIWVLGAETAHEDGKQTDLAVRQLYIQDYIRQWEQFLSDIQLNSSADLTQRINTARLLSGNHSPLRQLVINLSKQLTLTRAQPEDKNAKDTAASSDNSATRTLQALFTSPRANGEQAVVQQTPEQAVTAHFAPVIELAQPLQQGSKVLAVDDFLKQIDDLYRYLTAVQDAANSGMPPPASDAISRLQASAGRLPGSLQNMVSGMAVGASSDAQRRDMDNVRKRITMEVGSFCRQAIAGRYPLVRNARSEVTPDDLARMFAPGTGLMDSFFRDNLASKVDTTRAAWRFTPGIDGKTLPGGEALLRPFQQAQSIRDAFFANGATTPSFRVTLRTVKMDNDILNMTLDVDGQILRYSHGPQAVQLVSWPGPGGTSQVRMQLGLTNGTTSTLTTSGPWALNRFFDRARVTSVGGLTREASFSVDGHNVTLSFTPGSIRNPFQLPAFSCP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9936 | - | - |
Protein sequence: 1209 a.a.
Nucleotide sequence: 3627 bp