Detailed information of component protein


Summary

Component ID T6CP015442
Component protein type TagE
T6SS ID (Type) T6SS01222 experimental (Type i3)
Strain Pantoea ananatis LMG 2665
Replicon chromosome
Sequence Protein sequence (488 a.a.); Nucleotide sequence (1464 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) N454_00613
Coordinate (Strand) 14187..15650 (-)
NCBI ID 574093468
GenBank KF590027
Uniprot ID W8DW21_PANAN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pkinase PF00069.27 1.2e-25 23..244
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-341 MSENDNHQNVPNALPIGYRFNEFEIKDVIGGGGFGIVYRAWDHQLERDIAIKEFMPASLAVRSDDLNLVLRSERFSKTFHAGLNSFIQEARLLARFNHPNLLHVLRFWVQNDTAYMGTVFYSGTTLSNMRERHPHLIDENWIRRLLPPLLGAIKTIHDAGYLHRDISLDNIQIQSNGDPVLLDFGSARKTIGNLSDESETMLRPGYAPIEQYSDNDESEQGAWTDIYALGAVLHTLITGAPPPVSVVRSIEDNYQPLVQRAPAGYSATLLAAVDSALSLKPEDRPQSIDAFAASMVLPEKAPEPLPEVKHSGPGTMLVPIQEEDKAAAAAATPLKKLMRNR
Transmembrane helix 342-364 FVLPGLVAAGVLVGVCVGLLMAG
Outside 365-487 GDKEGDAPANVAQTETAPATQAPAEQPAATPVQTQTAQAEPEKPQEPVAPPPEPVAQVYIKLQPGERVQVNGKPQAVVPAANGFAALQLAPGNYTFSVTGQRGEREQTLTINQEGVWLLDPHI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9969 - -


  Protein sequence: 488 a.a.    

>T6CP015442 KF590027:c15650-14187 [Pantoea ananatis LMG 2665] [TagE]
MSENDNHQNVPNALPIGYRFNEFEIKDVIGGGGFGIVYRAWDHQLERDIAIKEFMPASLAVRSDDLNLVLRSERFSKTFH
AGLNSFIQEARLLARFNHPNLLHVLRFWVQNDTAYMGTVFYSGTTLSNMRERHPHLIDENWIRRLLPPLLGAIKTIHDAG
YLHRDISLDNIQIQSNGDPVLLDFGSARKTIGNLSDESETMLRPGYAPIEQYSDNDESEQGAWTDIYALGAVLHTLITGA
PPPVSVVRSIEDNYQPLVQRAPAGYSATLLAAVDSALSLKPEDRPQSIDAFAASMVLPEKAPEPLPEVKHSGPGTMLVPI
QEEDKAAAAAATPLKKLMRNRFVLPGLVAAGVLVGVCVGLLMAGGDKEGDAPANVAQTETAPATQAPAEQPAATPVQTQT
AQAEPEKPQEPVAPPPEPVAQVYIKLQPGERVQVNGKPQAVVPAANGFAALQLAPGNYTFSVTGQRGEREQTLTINQEGV
WLLDPHI*

  Nucleotide sequence: 1464 bp    

>T6CP015442 KF590027:c15650-14187 [Pantoea ananatis LMG 2665] [TagE]
ATGTCGGAAAATGATAATCACCAGAATGTACCCAATGCCCTCCCGATTGGTTACCGGTTTAATGAGTTTGAAATCAAAGA
TGTCATCGGCGGTGGCGGTTTCGGCATTGTCTATCGTGCCTGGGATCACCAACTGGAGCGCGATATCGCGATTAAAGAGT
TTATGCCCGCGTCGCTGGCCGTGCGCAGCGACGACCTGAACCTGGTATTGCGAAGTGAGCGATTCAGTAAAACTTTCCAT
GCGGGCCTGAACAGCTTTATTCAGGAAGCCCGTCTGCTGGCACGTTTTAATCATCCGAACCTGCTTCACGTTCTGCGCTT
TTGGGTGCAAAACGATACGGCCTATATGGGCACGGTGTTTTACAGCGGCACCACGTTGTCTAACATGCGTGAACGCCATC
CCCATTTGATTGATGAGAACTGGATCCGTCGCCTGCTGCCACCGCTGCTGGGTGCCATCAAGACCATTCATGATGCGGGC
TATCTGCACCGCGACATCTCGCTGGATAATATTCAAATCCAGAGCAATGGCGATCCGGTATTACTGGATTTCGGCTCCGC
GCGCAAAACCATCGGTAACCTTTCTGATGAAAGTGAAACCATGCTGCGTCCGGGCTATGCGCCGATTGAACAGTACAGCG
ATAACGATGAAAGCGAACAGGGCGCGTGGACGGACATTTACGCGCTGGGTGCCGTGCTGCACACGTTAATCACCGGCGCA
CCGCCGCCGGTCAGCGTGGTGCGCAGTATTGAAGATAATTATCAACCGCTCGTGCAACGCGCACCTGCGGGTTACAGCGC
AACGCTGCTGGCAGCGGTCGATAGCGCCTTGTCCCTTAAGCCGGAAGATCGCCCGCAGAGCATTGATGCGTTTGCCGCCT
CGATGGTACTGCCTGAAAAAGCACCTGAACCGCTGCCTGAAGTGAAGCACAGTGGGCCGGGTACGATGCTGGTACCAATT
CAGGAAGAGGATAAGGCGGCTGCCGCTGCAGCAACACCGCTGAAAAAGCTGATGCGTAACCGCTTTGTACTGCCTGGTTT
GGTCGCTGCGGGCGTGCTGGTGGGTGTTTGTGTCGGTTTGCTGATGGCGGGCGGCGACAAAGAAGGTGATGCACCTGCCA
ATGTCGCACAGACCGAAACGGCCCCAGCCACTCAGGCACCGGCTGAACAACCTGCTGCAACGCCTGTGCAAACCCAGACT
GCCCAGGCCGAGCCGGAAAAACCTCAGGAGCCGGTTGCACCACCGCCTGAACCTGTGGCGCAGGTTTATATTAAGCTCCA
GCCCGGCGAGCGTGTTCAGGTGAATGGCAAGCCTCAGGCAGTGGTTCCGGCAGCCAATGGTTTTGCGGCGCTGCAGCTGG
CACCCGGCAACTACACGTTTTCTGTGACAGGCCAGCGTGGCGAACGTGAACAAACGTTGACCATTAATCAGGAAGGCGTC
TGGTTACTTGATCCCCATATTTAA