Detailed information of component protein
Summary
| Component ID | T6CP015454 |
| Component protein type | TagF |
| T6SS ID (Type) | T6SS01222  (Type i3) |
| Strain | Pantoea ananatis LMG 2665 |
| Replicon | chromosome |
| Sequence | Protein sequence (238 a.a.); Nucleotide sequence (714 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | N454_00633 |
| Coordinate (Strand) | 35814..36527 (-) |
| NCBI ID | 574093488 |
| GenBank | KF590027 |
| Uniprot ID | W8DW35_PANAN |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TagF_N | PF09867.11 | 1e-39 | 8..142 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-237 | MTHYAAPGWYGKLPSSGDFVKRRFPDTLQRQWSNWFQVGLHHWKTSAEGENAPSRAFLKAPVWNFVVPPMLGTQLIQMGCLTAARDSVGRHYPLCALRYFTPAEWMPLLLTRSGDWYHQMGNTLLRAVQDGGTPEQFDQALLSIPLPQPQQDEASSDILAVIGNGEQDSTLSWHLPSQSFDPQFQTSFWWTNQSDGFPLYTHVHSGNLTAQLFSLLFDPAGGAKPGRNGLYPPMFES |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9882 | - | - |
Protein sequence: 238 a.a.
>T6CP015454 KF590027:c36527-35814 [Pantoea ananatis LMG 2665] [TagF]
MTHYAAPGWYGKLPSSGDFVKRRFPDTLQRQWSNWFQVGLHHWKTSAEGENAPSRAFLKAPVWNFVVPPMLGTQLIQMGC
LTAARDSVGRHYPLCALRYFTPAEWMPLLLTRSGDWYHQMGNTLLRAVQDGGTPEQFDQALLSIPLPQPQQDEASSDILA
VIGNGEQDSTLSWHLPSQSFDPQFQTSFWWTNQSDGFPLYTHVHSGNLTAQLFSLLFDPAGGAKPGRNGLYPPMFES*
MTHYAAPGWYGKLPSSGDFVKRRFPDTLQRQWSNWFQVGLHHWKTSAEGENAPSRAFLKAPVWNFVVPPMLGTQLIQMGC
LTAARDSVGRHYPLCALRYFTPAEWMPLLLTRSGDWYHQMGNTLLRAVQDGGTPEQFDQALLSIPLPQPQQDEASSDILA
VIGNGEQDSTLSWHLPSQSFDPQFQTSFWWTNQSDGFPLYTHVHSGNLTAQLFSLLFDPAGGAKPGRNGLYPPMFES*
Nucleotide sequence: 714 bp
>T6CP015454 KF590027:c36527-35814 [Pantoea ananatis LMG 2665] [TagF]
ATGACCCATTACGCAGCACCTGGCTGGTACGGCAAACTGCCTAGTTCGGGTGATTTTGTTAAACGACGCTTTCCCGATAC
CTTGCAGCGCCAGTGGTCTAACTGGTTTCAGGTGGGATTGCACCACTGGAAGACCAGTGCTGAAGGCGAAAATGCGCCTT
CTCGGGCTTTTCTTAAAGCCCCGGTGTGGAATTTTGTGGTACCACCGATGTTGGGTACGCAGCTGATTCAAATGGGCTGT
CTGACGGCCGCACGCGATAGCGTGGGTCGCCATTATCCCCTCTGTGCCCTCCGCTATTTTACCCCAGCGGAGTGGATGCC
TTTGTTGCTGACGCGTTCAGGCGACTGGTATCACCAGATGGGAAATACCTTATTGCGGGCGGTTCAGGATGGCGGTACGC
CCGAACAGTTTGATCAGGCGTTGTTGAGCATTCCACTGCCGCAGCCTCAGCAGGATGAGGCGTCATCAGATATTCTGGCG
GTGATCGGCAACGGTGAACAGGATTCAACACTGAGCTGGCATCTGCCGTCTCAAAGCTTTGATCCGCAGTTCCAGACCAG
TTTCTGGTGGACGAATCAGAGCGACGGTTTTCCGCTTTATACCCATGTCCACAGTGGAAACTTAACCGCGCAGTTATTTT
CCCTGTTGTTTGATCCGGCAGGCGGTGCAAAGCCGGGACGAAACGGACTTTATCCCCCGATGTTTGAATCCTGA
ATGACCCATTACGCAGCACCTGGCTGGTACGGCAAACTGCCTAGTTCGGGTGATTTTGTTAAACGACGCTTTCCCGATAC
CTTGCAGCGCCAGTGGTCTAACTGGTTTCAGGTGGGATTGCACCACTGGAAGACCAGTGCTGAAGGCGAAAATGCGCCTT
CTCGGGCTTTTCTTAAAGCCCCGGTGTGGAATTTTGTGGTACCACCGATGTTGGGTACGCAGCTGATTCAAATGGGCTGT
CTGACGGCCGCACGCGATAGCGTGGGTCGCCATTATCCCCTCTGTGCCCTCCGCTATTTTACCCCAGCGGAGTGGATGCC
TTTGTTGCTGACGCGTTCAGGCGACTGGTATCACCAGATGGGAAATACCTTATTGCGGGCGGTTCAGGATGGCGGTACGC
CCGAACAGTTTGATCAGGCGTTGTTGAGCATTCCACTGCCGCAGCCTCAGCAGGATGAGGCGTCATCAGATATTCTGGCG
GTGATCGGCAACGGTGAACAGGATTCAACACTGAGCTGGCATCTGCCGTCTCAAAGCTTTGATCCGCAGTTCCAGACCAG
TTTCTGGTGGACGAATCAGAGCGACGGTTTTCCGCTTTATACCCATGTCCACAGTGGAAACTTAACCGCGCAGTTATTTT
CCCTGTTGTTTGATCCGGCAGGCGGTGCAAAGCCGGGACGAAACGGACTTTATCCCCCGATGTTTGAATCCTGA