Detailed information of component protein


Summary

Component ID T6CP015454
Component protein type TagF
T6SS ID (Type) T6SS01222 experimental (Type i3)
Strain Pantoea ananatis LMG 2665
Replicon chromosome
Sequence Protein sequence (238 a.a.); Nucleotide sequence (714 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) N454_00633
Coordinate (Strand) 35814..36527 (-)
NCBI ID 574093488
GenBank KF590027
Uniprot ID W8DW35_PANAN
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TagF_N PF09867.11 1e-39 8..142

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-237 MTHYAAPGWYGKLPSSGDFVKRRFPDTLQRQWSNWFQVGLHHWKTSAEGENAPSRAFLKAPVWNFVVPPMLGTQLIQMGCLTAARDSVGRHYPLCALRYFTPAEWMPLLLTRSGDWYHQMGNTLLRAVQDGGTPEQFDQALLSIPLPQPQQDEASSDILAVIGNGEQDSTLSWHLPSQSFDPQFQTSFWWTNQSDGFPLYTHVHSGNLTAQLFSLLFDPAGGAKPGRNGLYPPMFES



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9882 - -



  Protein sequence: 238 a.a.    

>T6CP015454 KF590027:c36527-35814 [Pantoea ananatis LMG 2665] [TagF]
MTHYAAPGWYGKLPSSGDFVKRRFPDTLQRQWSNWFQVGLHHWKTSAEGENAPSRAFLKAPVWNFVVPPMLGTQLIQMGC
LTAARDSVGRHYPLCALRYFTPAEWMPLLLTRSGDWYHQMGNTLLRAVQDGGTPEQFDQALLSIPLPQPQQDEASSDILA
VIGNGEQDSTLSWHLPSQSFDPQFQTSFWWTNQSDGFPLYTHVHSGNLTAQLFSLLFDPAGGAKPGRNGLYPPMFES*

  Nucleotide sequence: 714 bp    

>T6CP015454 KF590027:c36527-35814 [Pantoea ananatis LMG 2665] [TagF]
ATGACCCATTACGCAGCACCTGGCTGGTACGGCAAACTGCCTAGTTCGGGTGATTTTGTTAAACGACGCTTTCCCGATAC
CTTGCAGCGCCAGTGGTCTAACTGGTTTCAGGTGGGATTGCACCACTGGAAGACCAGTGCTGAAGGCGAAAATGCGCCTT
CTCGGGCTTTTCTTAAAGCCCCGGTGTGGAATTTTGTGGTACCACCGATGTTGGGTACGCAGCTGATTCAAATGGGCTGT
CTGACGGCCGCACGCGATAGCGTGGGTCGCCATTATCCCCTCTGTGCCCTCCGCTATTTTACCCCAGCGGAGTGGATGCC
TTTGTTGCTGACGCGTTCAGGCGACTGGTATCACCAGATGGGAAATACCTTATTGCGGGCGGTTCAGGATGGCGGTACGC
CCGAACAGTTTGATCAGGCGTTGTTGAGCATTCCACTGCCGCAGCCTCAGCAGGATGAGGCGTCATCAGATATTCTGGCG
GTGATCGGCAACGGTGAACAGGATTCAACACTGAGCTGGCATCTGCCGTCTCAAAGCTTTGATCCGCAGTTCCAGACCAG
TTTCTGGTGGACGAATCAGAGCGACGGTTTTCCGCTTTATACCCATGTCCACAGTGGAAACTTAACCGCGCAGTTATTTT
CCCTGTTGTTTGATCCGGCAGGCGGTGCAAAGCCGGGACGAAACGGACTTTATCCCCCGATGTTTGAATCCTGA