Detailed information of component protein


Summary

Component ID T6CP015443
Component protein type TssH
T6SS ID (Type) T6SS01222 experimental (Type i3)
Strain Pantoea ananatis LMG 2665
Replicon chromosome
Sequence Protein sequence (873 a.a.); Nucleotide sequence (2619 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) N454_00614
Coordinate (Strand) 15680..18298 (-)
NCBI ID 574093469
GenBank KF590027
Uniprot ID W8DVM1_PANAN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.4e-39 603..768
AAA_lid_9 PF17871.3 2.6e-14 364..458
ClpB_D2-small PF10431.11 1.5e-13 776..851
AAA PF00004.31 1.6e-09 224..356
Clp_N PF02861.22 4.3e-05 27..75
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-872 MSEISRAVLFGKLDTLLFTSLESATAFCKLRGNPYVELVHWLHQLMQQQDGDLQQVIKHFSLDENALTRDIVAALDRLPRGAGAVSDLAEHIDSAVERAWVYASLKYGATRIRGGHLLIGMLKTFTLASVLKGISPQFSRVNADALLEQFDTLLAHSKEVQQALVQPAGDAAAPPAAGDSTLAQYAQDLTARARDGKIDPVAGRDEEIRQMVDILMRRRQNNPLLTGEAGVGKTAVVEGLALRIAAGDVPAPLRDVQLWLLDIGMLQAGAGMKGEFEARLQALINEVQSSPTPIVLFIDEIHTLVGAGGQQGTGDAANLLKPALARGQLRTIGATTWAEYKKYIEKDPALTRRFQTVQVQEPDEAKAILMLRSTVSALEKHHQVLLLDEAVSAAVKLSHRYIPARQLPDFFFFFFFFFFFSCARVAVSQGAQPAALEDCLHRLAALEIEAEIAEREVKVGLGDETRQATIAAQRAALEAERDALDARWQQERELVEQLIALRARCVTEGETSLREQLDETRQKLHAVQGEAPLLFAAVDASVVAAVVSDWTGIPLGRMVKNEIDAVLNLADTLNQRVIGQRHGLDLIAKRVRTSRARLDNPNKPVGVFMLCGPSGVGKTETALALAESLYGGEQNIITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHELFFQVFDKGWMEDGEGRHIDFRNTIIILTSNVGTQLISALCADPELMPDPDALSTALRKPLLEVFPPALLGRLLVVPYYPLSDEMLAEIVKLQLGRIVRRLEENHGIEAIIDDSVVSQIVQRCTEVESGGRMVDAILTNTLLPQMSQILLSAHARDERYRRVQVSCDQGEFVCQFAV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9582 - -


  Protein sequence: 873 a.a.    

>T6CP015443 KF590027:c18298-15680 [Pantoea ananatis LMG 2665] [TssH]
MSEISRAVLFGKLDTLLFTSLESATAFCKLRGNPYVELVHWLHQLMQQQDGDLQQVIKHFSLDENALTRDIVAALDRLPR
GAGAVSDLAEHIDSAVERAWVYASLKYGATRIRGGHLLIGMLKTFTLASVLKGISPQFSRVNADALLEQFDTLLAHSKEV
QQALVQPAGDAAAPPAAGDSTLAQYAQDLTARARDGKIDPVAGRDEEIRQMVDILMRRRQNNPLLTGEAGVGKTAVVEGL
ALRIAAGDVPAPLRDVQLWLLDIGMLQAGAGMKGEFEARLQALINEVQSSPTPIVLFIDEIHTLVGAGGQQGTGDAANLL
KPALARGQLRTIGATTWAEYKKYIEKDPALTRRFQTVQVQEPDEAKAILMLRSTVSALEKHHQVLLLDEAVSAAVKLSHR
YIPARQLPDFFFFFFFFFFFSCARVAVSQGAQPAALEDCLHRLAALEIEAEIAEREVKVGLGDETRQATIAAQRAALEAE
RDALDARWQQERELVEQLIALRARCVTEGETSLREQLDETRQKLHAVQGEAPLLFAAVDASVVAAVVSDWTGIPLGRMVK
NEIDAVLNLADTLNQRVIGQRHGLDLIAKRVRTSRARLDNPNKPVGVFMLCGPSGVGKTETALALAESLYGGEQNIITIN
MSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHELFFQVFDKGWMEDGEGRHIDFRNTI
IILTSNVGTQLISALCADPELMPDPDALSTALRKPLLEVFPPALLGRLLVVPYYPLSDEMLAEIVKLQLGRIVRRLEENH
GIEAIIDDSVVSQIVQRCTEVESGGRMVDAILTNTLLPQMSQILLSAHARDERYRRVQVSCDQGEFVCQFAV*

  Nucleotide sequence: 2619 bp    

>T6CP015443 KF590027:c18298-15680 [Pantoea ananatis LMG 2665] [TssH]
ATGTCAGAGATCAGCCGTGCCGTGCTATTCGGCAAACTGGATACGCTGTTATTTACCTCGCTTGAGAGTGCGACCGCCTT
TTGTAAACTGCGTGGCAACCCCTACGTTGAACTGGTGCACTGGTTGCATCAGCTCATGCAGCAGCAGGATGGCGATCTTC
AGCAGGTGATTAAGCATTTTTCACTGGATGAAAACGCGCTGACGCGGGATATCGTCGCTGCACTGGACCGCCTGCCGCGC
GGTGCGGGTGCGGTGTCCGATCTCGCAGAACACATCGACAGCGCCGTTGAGCGCGCCTGGGTTTATGCATCACTCAAATA
CGGTGCGACCCGCATTCGCGGTGGTCACCTGCTGATAGGTATGCTGAAGACCTTTACGCTCGCCAGCGTCCTGAAAGGCA
TTTCACCTCAGTTTTCACGCGTGAACGCCGATGCTTTACTGGAGCAGTTCGATACCTTACTGGCGCACAGTAAAGAAGTT
CAGCAGGCGCTGGTTCAGCCCGCAGGCGATGCTGCCGCCCCTCCGGCGGCGGGCGACAGCACGTTAGCGCAGTATGCGCA
GGATCTGACCGCGCGAGCGCGCGACGGCAAGATCGACCCGGTTGCGGGCCGTGATGAAGAGATCCGCCAGATGGTGGATA
TCCTGATGCGCCGTCGCCAGAACAATCCGTTACTCACCGGTGAAGCTGGCGTGGGTAAAACGGCAGTGGTAGAAGGGCTG
GCGCTACGCATTGCCGCCGGTGATGTGCCGGCACCGCTGCGTGATGTGCAACTGTGGCTGCTGGATATTGGCATGTTGCA
GGCAGGCGCCGGCATGAAAGGCGAATTCGAAGCGCGTTTACAGGCCCTGATTAACGAAGTGCAATCCAGCCCTACGCCGA
TTGTGTTATTCATTGATGAAATTCATACCCTGGTCGGTGCAGGCGGTCAGCAGGGCACAGGCGATGCCGCCAACCTGTTA
AAGCCGGCCCTGGCGCGCGGACAGTTGCGCACGATTGGCGCAACGACCTGGGCGGAATACAAGAAATACATCGAAAAAGA
TCCTGCATTGACCCGCCGCTTCCAGACCGTTCAGGTGCAGGAGCCGGATGAAGCAAAAGCGATTCTGATGCTGCGCAGCA
CCGTGAGCGCGCTGGAAAAACACCATCAGGTGCTGTTACTGGATGAAGCCGTCAGCGCCGCCGTTAAGCTCTCTCACCGT
TACATTCCTGCCCGCCAGCTGCCGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGTGCACGCGTTGCCGT
CAGCCAGGGCGCACAGCCTGCCGCGCTGGAAGACTGCCTGCACCGTCTGGCCGCGCTGGAAATCGAAGCGGAGATCGCCG
AACGTGAAGTCAAAGTGGGGCTGGGTGATGAAACCCGCCAGGCCACGATTGCCGCCCAGCGCGCTGCCCTGGAAGCAGAG
CGCGATGCGCTGGACGCCCGCTGGCAGCAGGAGCGTGAGCTGGTCGAACAGCTGATTGCCCTGCGCGCGCGTTGCGTGAC
CGAAGGCGAAACTTCCCTGCGCGAGCAGCTCGATGAAACCCGACAGAAGTTGCATGCGGTTCAGGGTGAAGCCCCGTTAC
TGTTTGCTGCCGTTGACGCCAGCGTCGTTGCCGCAGTGGTATCCGACTGGACCGGCATTCCGCTGGGCCGGATGGTGAAA
AACGAAATTGACGCCGTGCTTAACCTCGCGGACACGTTGAATCAGCGCGTAATTGGGCAGCGTCATGGGCTGGATCTGAT
TGCCAAACGCGTTCGCACCTCACGCGCCCGACTGGACAATCCCAATAAACCGGTCGGTGTGTTTATGCTCTGTGGCCCGT
CAGGCGTCGGGAAAACCGAAACCGCGCTGGCGCTGGCCGAATCGCTTTATGGTGGAGAGCAAAACATCATCACCATCAAC
ATGAGCGAGTTCCAGGAAGCGCACACCGTTTCAACGCTGAAAGGTGCCCCTCCAGGCTATGTAGGTTACGGTGAAGGCGG
TGTGCTGACGGAGGCCGTGCGTCGTCGTCCTTACAGCGTCGTGCTGCTGGATGAGATTGAAAAAGCGCATCCTGATGTGC
ATGAGCTGTTTTTCCAGGTATTCGACAAAGGCTGGATGGAAGATGGAGAAGGGCGCCACATTGATTTCCGCAATACCATT
ATCATCCTCACCTCTAACGTCGGTACGCAACTGATCAGTGCGCTCTGTGCCGATCCGGAACTCATGCCGGATCCCGACGC
GCTCAGCACCGCTTTACGTAAACCCTTACTGGAGGTGTTCCCGCCTGCACTGCTGGGCCGTCTGCTGGTGGTGCCTTACT
ATCCCCTCAGTGACGAGATGCTGGCAGAGATTGTTAAGCTGCAACTGGGGCGCATTGTACGCCGCCTGGAAGAGAACCAC
GGTATTGAAGCCATTATTGACGATTCGGTCGTCAGCCAGATCGTGCAGCGTTGTACGGAAGTGGAGTCTGGAGGTCGCAT
GGTCGATGCCATCCTGACAAATACCCTGTTGCCGCAGATGAGCCAGATACTGCTCAGCGCCCATGCTCGTGATGAACGTT
ATCGTCGTGTGCAGGTCAGCTGTGATCAGGGCGAGTTTGTTTGCCAGTTTGCTGTCTAA