Detailed information of component protein


Summary

Component ID T6CP015449
Component protein type TagH
T6SS ID (Type) T6SS01222 experimental (Type i3)
Strain Pantoea ananatis LMG 2665
Replicon chromosome
Sequence Protein sequence (632 a.a.); Nucleotide sequence (1896 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) N454_00621
Coordinate (Strand) 24520..26415 (-)
NCBI ID 574093475
GenBank KF590027
Uniprot ID W8DUL2_PANAN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 7.9e-07 27..93
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-631 MRFTIITAKPGHEPPQISFDFLPPGGTIGRGVDNNLILPDDDRTISRLQAIVHITAEGECRLTNRGNVTRVLLNDIPLERGRQVELQDGDILGIDDYRLLVNDLNGEQQSQQPPLTAAAAPKPQPVPNAVPVQAPAASTAAIPSEIWDSLAKEFSISDDLSKRKSAAPEMPEANPLTSTAANRNPEDPLAQLMSDKPLDIGQQPKTSSLFDEEDALFAQESIFDDRTPSTLSAKQNAQGQPKIEETSTDVDPLNLFGSQATPDPRHHDDPLGLMMSGAVPLAQPDMPVSQPMAAPSQPKENHQSAPLQQKELHQAAPLQPQENHQPMPDILDTAPVELADLSSSPLFDHTETQATHDPAFDPQPQPAQPEGAQSPIDYGGITLPTPQAVQRTPSPTPKGRLRIDPVASHNNSGGTEQSGNASSGDALKGELLDALLEGMGLQDLQPTPQFDREQMRQFGQMLSMFSQGTVALLSSRSILKRGVKADMTVILDDANNPFKLLPSGKTVLMQMFGSRMPGFMPPRQAVRDALIDLQAHQLGMIAGIRAIIASMLQSFNPDQLEEEARQNGSVSRIGLPGSRKAALWEHFIQRYGETAGEIEDDFHTLFGEAFLHAYDMEVNQYKDSQTHTDDA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9815 - -


  Protein sequence: 632 a.a.    

>T6CP015449 KF590027:c26415-24520 [Pantoea ananatis LMG 2665] [TagH]
MRFTIITAKPGHEPPQISFDFLPPGGTIGRGVDNNLILPDDDRTISRLQAIVHITAEGECRLTNRGNVTRVLLNDIPLER
GRQVELQDGDILGIDDYRLLVNDLNGEQQSQQPPLTAAAAPKPQPVPNAVPVQAPAASTAAIPSEIWDSLAKEFSISDDL
SKRKSAAPEMPEANPLTSTAANRNPEDPLAQLMSDKPLDIGQQPKTSSLFDEEDALFAQESIFDDRTPSTLSAKQNAQGQ
PKIEETSTDVDPLNLFGSQATPDPRHHDDPLGLMMSGAVPLAQPDMPVSQPMAAPSQPKENHQSAPLQQKELHQAAPLQP
QENHQPMPDILDTAPVELADLSSSPLFDHTETQATHDPAFDPQPQPAQPEGAQSPIDYGGITLPTPQAVQRTPSPTPKGR
LRIDPVASHNNSGGTEQSGNASSGDALKGELLDALLEGMGLQDLQPTPQFDREQMRQFGQMLSMFSQGTVALLSSRSILK
RGVKADMTVILDDANNPFKLLPSGKTVLMQMFGSRMPGFMPPRQAVRDALIDLQAHQLGMIAGIRAIIASMLQSFNPDQL
EEEARQNGSVSRIGLPGSRKAALWEHFIQRYGETAGEIEDDFHTLFGEAFLHAYDMEVNQYKDSQTHTDDA*

  Nucleotide sequence: 1896 bp    

>T6CP015449 KF590027:c26415-24520 [Pantoea ananatis LMG 2665] [TagH]
ATGCGCTTTACGATAATAACCGCTAAACCCGGCCATGAACCGCCGCAAATCAGTTTCGATTTTCTTCCTCCAGGCGGCAC
TATCGGTCGAGGCGTGGATAATAATCTGATATTGCCCGACGACGATCGCACTATTTCTCGCCTGCAGGCTATCGTGCATA
TTACTGCAGAGGGCGAATGTCGCCTGACCAACCGCGGTAACGTTACGCGCGTGCTGCTGAATGACATCCCGCTTGAGCGT
GGACGTCAGGTGGAGTTGCAGGACGGAGATATTCTCGGCATCGACGACTATCGCCTGCTGGTTAACGATCTTAATGGCGA
GCAGCAATCGCAGCAGCCTCCGTTGACCGCTGCAGCCGCACCTAAGCCGCAGCCCGTACCCAATGCGGTCCCTGTACAGG
CGCCGGCTGCCAGCACGGCTGCCATTCCCAGCGAGATCTGGGACAGCCTTGCCAAAGAGTTTTCAATTTCTGATGACTTA
TCGAAACGTAAAAGTGCTGCGCCAGAAATGCCGGAGGCAAATCCGTTAACCTCTACAGCGGCAAACCGTAATCCCGAAGA
TCCGCTGGCTCAGTTAATGAGCGATAAACCGCTGGATATCGGTCAGCAACCTAAGACAAGCAGCCTGTTTGATGAAGAGG
ATGCGCTGTTTGCTCAGGAAAGCATTTTTGATGACCGCACGCCCAGCACCTTGTCGGCAAAACAAAATGCGCAAGGGCAG
CCCAAAATAGAGGAAACCTCCACGGACGTGGACCCGTTAAATCTGTTTGGCAGCCAGGCCACGCCGGACCCGCGTCATCA
TGACGATCCGCTGGGGTTAATGATGAGCGGTGCAGTGCCGCTGGCTCAGCCAGATATGCCGGTTTCGCAACCTATGGCTG
CGCCATCGCAGCCGAAAGAAAACCATCAGTCTGCACCCTTGCAGCAGAAAGAGCTCCATCAAGCGGCGCCATTACAGCCG
CAAGAAAATCACCAGCCGATGCCAGATATCCTGGATACTGCACCGGTTGAGTTGGCTGATTTAAGCAGTTCACCGCTGTT
TGATCACACTGAAACACAGGCCACTCACGATCCCGCTTTCGATCCTCAACCGCAGCCTGCCCAGCCTGAAGGAGCGCAAA
GCCCGATTGATTACGGCGGCATTACCTTGCCAACACCGCAGGCGGTGCAACGCACGCCTTCGCCCACGCCAAAAGGGCGG
CTGCGCATCGATCCGGTTGCCTCGCACAATAACAGCGGTGGGACCGAGCAGAGTGGCAATGCCAGTAGCGGTGATGCCTT
AAAGGGCGAGTTACTGGATGCACTGCTGGAAGGTATGGGCCTGCAGGATCTGCAACCGACACCGCAGTTCGATCGCGAGC
AGATGCGGCAGTTCGGCCAGATGCTCAGCATGTTCTCGCAGGGAACGGTGGCACTGCTATCTTCCCGGTCGATTTTAAAA
CGCGGTGTAAAAGCCGACATGACCGTGATCCTGGATGATGCTAACAACCCTTTTAAGCTGCTGCCGTCAGGTAAAACCGT
ATTGATGCAGATGTTTGGCAGCCGTATGCCAGGTTTTATGCCGCCACGCCAGGCCGTGCGTGACGCACTGATTGACCTCC
AGGCGCACCAGTTAGGGATGATTGCCGGTATTCGCGCCATTATTGCTTCCATGCTGCAGTCCTTTAACCCCGATCAGCTC
GAAGAAGAAGCGCGTCAAAACGGTTCCGTATCGCGCATTGGACTACCCGGCAGCCGTAAAGCCGCGCTGTGGGAGCATTT
TATCCAGCGCTATGGCGAAACTGCCGGTGAAATTGAAGATGACTTCCATACCTTGTTTGGCGAAGCCTTCTTGCACGCGT
ACGACATGGAAGTAAATCAGTATAAAGACTCACAAACCCACACGGATGACGCATGA