Detailed information of component protein
Summary
| Component ID | T6CP015452 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01222  (Type i3) |
| Strain | Pantoea ananatis LMG 2665 |
| Replicon | chromosome |
| Sequence | Protein sequence (181 a.a.); Nucleotide sequence (543 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | N454_00631 |
| Coordinate (Strand) | 34170..34712 (-) |
| NCBI ID | AHG23347.1 |
| GenBank | KF590027 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 4.1e-58 | 17..166 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-180 | MERTMPTMKSSGQKFIARNRAPRVQIEYDVEVYGAERKIQLPFIMGVLADLAGKPLEPQASVDDRKFMEIDIDNFDERMKAMKPRAAFQVDNTLNGDGKLNIDLTFESMDDFSPDAIARKVDPLNSLLEARTQLSNLLTYMDGKNGAEELIGKILQDPTLLQALSHVPKQTDTPEGKEEQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9868 | - | - |
Protein sequence: 181 a.a.
>T6CP015452 KF590027:c34712-34170 [Pantoea ananatis LMG 2665] [TssB]
MERTMPTMKSSGQKFIARNRAPRVQIEYDVEVYGAERKIQLPFIMGVLADLAGKPLEPQASVDDRKFMEIDIDNFDERMK
AMKPRAAFQVDNTLNGDGKLNIDLTFESMDDFSPDAIARKVDPLNSLLEARTQLSNLLTYMDGKNGAEELIGKILQDPTL
LQALSHVPKQTDTPEGKEEQ*
MERTMPTMKSSGQKFIARNRAPRVQIEYDVEVYGAERKIQLPFIMGVLADLAGKPLEPQASVDDRKFMEIDIDNFDERMK
AMKPRAAFQVDNTLNGDGKLNIDLTFESMDDFSPDAIARKVDPLNSLLEARTQLSNLLTYMDGKNGAEELIGKILQDPTL
LQALSHVPKQTDTPEGKEEQ*
Nucleotide sequence: 543 bp
>T6CP015452 KF590027:c34712-34170 [Pantoea ananatis LMG 2665] [TssB]
ATGGAGAGAACCATGCCAACAATGAAGTCCAGTGGGCAGAAATTTATCGCCCGCAATCGCGCGCCACGCGTTCAGATTGA
ATATGACGTGGAAGTCTATGGCGCAGAACGTAAAATTCAGCTGCCATTCATCATGGGTGTTTTGGCCGATTTAGCCGGTA
AACCGCTGGAGCCGCAGGCCAGCGTTGACGACCGTAAATTCATGGAAATCGACATCGACAATTTCGATGAGCGTATGAAA
GCCATGAAGCCACGTGCGGCATTCCAGGTAGACAATACGTTGAACGGTGACGGCAAACTGAACATCGATCTGACCTTCGA
AAGCATGGACGATTTTTCTCCTGATGCCATTGCCCGCAAAGTCGATCCACTAAACAGCCTGCTTGAAGCACGTACCCAGC
TCTCCAACCTGCTGACCTATATGGACGGCAAAAACGGCGCCGAAGAGCTGATCGGCAAGATTTTACAGGATCCGACACTG
CTGCAGGCACTGTCACACGTGCCTAAGCAAACGGATACCCCTGAAGGTAAGGAGGAGCAGTAA
ATGGAGAGAACCATGCCAACAATGAAGTCCAGTGGGCAGAAATTTATCGCCCGCAATCGCGCGCCACGCGTTCAGATTGA
ATATGACGTGGAAGTCTATGGCGCAGAACGTAAAATTCAGCTGCCATTCATCATGGGTGTTTTGGCCGATTTAGCCGGTA
AACCGCTGGAGCCGCAGGCCAGCGTTGACGACCGTAAATTCATGGAAATCGACATCGACAATTTCGATGAGCGTATGAAA
GCCATGAAGCCACGTGCGGCATTCCAGGTAGACAATACGTTGAACGGTGACGGCAAACTGAACATCGATCTGACCTTCGA
AAGCATGGACGATTTTTCTCCTGATGCCATTGCCCGCAAAGTCGATCCACTAAACAGCCTGCTTGAAGCACGTACCCAGC
TCTCCAACCTGCTGACCTATATGGACGGCAAAAACGGCGCCGAAGAGCTGATCGGCAAGATTTTACAGGATCCGACACTG
CTGCAGGCACTGTCACACGTGCCTAAGCAAACGGATACCCCTGAAGGTAAGGAGGAGCAGTAA