Detailed information of component protein
Summary
| Component ID | T6CP015450 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01222  (Type i3) |
| Strain | Pantoea ananatis LMG 2665 |
| Replicon | chromosome |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | N454_00629 |
| Coordinate (Strand) | 31609..32091 (-) |
| NCBI ID | 574093484 |
| GenBank | KF590027 |
| Uniprot ID | W8DVN3_PANAN |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 5e-37 | 6..131 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-160 | MAIDMYLKVDGITGESKDSNHTGWIDITSFSWGANQPGNMSVGGGGGAGKVNFNDLHINAKIDKAVTALLKNCASGKHVTKVEVSVCKAGGTQIEYTRITLEDVLVTNVQFVGSEHDDTLGVTYAFQAAKVKQQYWEQSSSGGKGAESSAGWNIKENKEA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9637 | - | - |
Protein sequence: 161 a.a.
>T6CP015450 KF590027:c32091-31609 [Pantoea ananatis LMG 2665] [TssD]
MAIDMYLKVDGITGESKDSNHTGWIDITSFSWGANQPGNMSVGGGGGAGKVNFNDLHINAKIDKAVTALLKNCASGKHVT
KVEVSVCKAGGTQIEYTRITLEDVLVTNVQFVGSEHDDTLGVTYAFQAAKVKQQYWEQSSSGGKGAESSAGWNIKENKEA
*
MAIDMYLKVDGITGESKDSNHTGWIDITSFSWGANQPGNMSVGGGGGAGKVNFNDLHINAKIDKAVTALLKNCASGKHVT
KVEVSVCKAGGTQIEYTRITLEDVLVTNVQFVGSEHDDTLGVTYAFQAAKVKQQYWEQSSSGGKGAESSAGWNIKENKEA
*
Nucleotide sequence: 483 bp
>T6CP015450 KF590027:c32091-31609 [Pantoea ananatis LMG 2665] [TssD]
ATGGCTATTGATATGTATTTGAAGGTAGACGGTATTACTGGTGAATCTAAAGATTCAAACCATACCGGCTGGATTGATAT
TACCTCTTTCTCCTGGGGAGCTAATCAGCCGGGTAATATGAGCGTGGGCGGCGGCGGCGGTGCTGGTAAAGTAAACTTCA
ACGACCTGCATATTAATGCCAAAATCGACAAGGCTGTCACTGCGCTGTTGAAAAACTGTGCCAGTGGTAAGCACGTCACT
AAGGTTGAAGTTTCAGTTTGCAAGGCTGGCGGTACGCAAATCGAGTACACCCGCATCACCCTGGAAGATGTGCTGGTTAC
CAACGTACAGTTCGTGGGCTCTGAGCACGACGATACCCTGGGCGTGACCTATGCATTCCAGGCTGCGAAAGTGAAACAGC
AGTACTGGGAGCAGAGTTCTTCCGGTGGCAAAGGCGCAGAAAGCAGCGCTGGCTGGAATATCAAAGAGAACAAAGAAGCG
TAA
ATGGCTATTGATATGTATTTGAAGGTAGACGGTATTACTGGTGAATCTAAAGATTCAAACCATACCGGCTGGATTGATAT
TACCTCTTTCTCCTGGGGAGCTAATCAGCCGGGTAATATGAGCGTGGGCGGCGGCGGCGGTGCTGGTAAAGTAAACTTCA
ACGACCTGCATATTAATGCCAAAATCGACAAGGCTGTCACTGCGCTGTTGAAAAACTGTGCCAGTGGTAAGCACGTCACT
AAGGTTGAAGTTTCAGTTTGCAAGGCTGGCGGTACGCAAATCGAGTACACCCGCATCACCCTGGAAGATGTGCTGGTTAC
CAACGTACAGTTCGTGGGCTCTGAGCACGACGATACCCTGGGCGTGACCTATGCATTCCAGGCTGCGAAAGTGAAACAGC
AGTACTGGGAGCAGAGTTCTTCCGGTGGCAAAGGCGCAGAAAGCAGCGCTGGCTGGAATATCAAAGAGAACAAAGAAGCG
TAA