Detailed information of component protein


Summary

Component ID T6CP015451
Component protein type TssC
T6SS ID (Type) T6SS01222 experimental (Type i3)
Strain Pantoea ananatis LMG 2665
Replicon chromosome
Sequence Protein sequence (500 a.a.); Nucleotide sequence (1500 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) N454_00630
Coordinate (Strand) 32671..34170 (-)
NCBI ID 574093485
GenBank KF590027
Uniprot ID W8DUL6_PANAN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.1e-138 68..370
VipB_2 PF18945.2 2.8e-44 380..491
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-499 MNQTSQQPQSQGGASFSQDEFSALLNKEFRPKSDQAREAVESAVKTLAQQALENTVTMSSDAYRTIQALIAEIDEKLSQQVNQIIHHEEFQKLESAWRGLSYLVNNTETDEMLKIRFMSISKQELSRILKRYKGVGWDQSPLFKKIYEQEYGQFGGEPFGCLVGDYYFDHSPQDVELLGEMARIGAAAHCPFITGTAPSVMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYLGLVMPRFLSRLPYGIRTNPVDSFDFEEQTDGSDHSNYSWTNAAYAMAANINRSFKEYGWCTSIRGVESGGAVEDLPCHTFPSDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYHDADATANARLAARLPYLFACCRFAHYLKCIVRDKIGSFRERDEMERWLNDWVMNYVDGDPANSSQETKSRKPLAAAEVNVEEQEDNPGYYAAKFFLRPHYQLEGLTVSLRLVSKLPSLKSNEN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9720 - -


  Protein sequence: 500 a.a.    

>T6CP015451 KF590027:c34170-32671 [Pantoea ananatis LMG 2665] [TssC]
MNQTSQQPQSQGGASFSQDEFSALLNKEFRPKSDQAREAVESAVKTLAQQALENTVTMSSDAYRTIQALIAEIDEKLSQQ
VNQIIHHEEFQKLESAWRGLSYLVNNTETDEMLKIRFMSISKQELSRILKRYKGVGWDQSPLFKKIYEQEYGQFGGEPFG
CLVGDYYFDHSPQDVELLGEMARIGAAAHCPFITGTAPSVMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYLG
LVMPRFLSRLPYGIRTNPVDSFDFEEQTDGSDHSNYSWTNAAYAMAANINRSFKEYGWCTSIRGVESGGAVEDLPCHTFP
SDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYHDADATANARLAARLPYLFACCRFA
HYLKCIVRDKIGSFRERDEMERWLNDWVMNYVDGDPANSSQETKSRKPLAAAEVNVEEQEDNPGYYAAKFFLRPHYQLEG
LTVSLRLVSKLPSLKSNEN*

  Nucleotide sequence: 1500 bp    

>T6CP015451 KF590027:c34170-32671 [Pantoea ananatis LMG 2665] [TssC]
ATGAACCAGACTTCTCAACAACCACAATCGCAGGGCGGTGCCAGCTTTAGTCAGGATGAATTCAGCGCGTTACTGAACAA
AGAATTTCGTCCTAAAAGCGACCAGGCACGCGAAGCTGTAGAAAGCGCGGTAAAAACCCTGGCGCAGCAGGCGCTGGAAA
ACACCGTGACCATGTCCAGCGATGCCTACCGCACCATTCAGGCGCTGATCGCTGAGATTGACGAAAAGCTGTCTCAGCAG
GTTAACCAGATTATTCATCACGAAGAGTTTCAGAAGCTGGAAAGCGCCTGGCGTGGTCTGAGCTATCTGGTGAATAACAC
CGAAACTGATGAGATGCTCAAGATTCGCTTTATGAGCATCTCCAAGCAGGAGCTGAGCCGCATCCTGAAACGCTATAAAG
GTGTGGGCTGGGATCAGAGCCCGCTGTTCAAGAAAATCTACGAGCAGGAATATGGCCAGTTTGGTGGTGAACCTTTTGGC
TGCCTGGTGGGCGACTACTATTTCGATCACAGCCCGCAGGACGTCGAGCTGCTGGGCGAAATGGCGCGTATCGGTGCTGC
AGCACACTGTCCGTTTATCACCGGGACAGCCCCAAGCGTAATGCAGATGGAATCCTGGCAGGAACTGGCGAATCCACGCG
ATCTGACCAAAATCTTCCAGAATACCGAATATGCTGCCTGGCGCAGCCTGCGCGAGTCTGAGGACGCCCGCTATCTGGGC
CTGGTGATGCCGCGCTTCCTTTCTCGTCTGCCTTACGGTATTCGCACCAACCCCGTGGACAGCTTTGATTTTGAAGAGCA
GACCGACGGTTCCGACCACAGCAACTACAGCTGGACCAACGCGGCTTATGCCATGGCGGCCAACATCAACCGTTCGTTCA
AAGAATACGGCTGGTGTACATCCATTCGCGGCGTGGAGTCGGGTGGGGCGGTTGAAGATCTGCCTTGCCACACGTTCCCA
AGCGATGACGGCGGCGTAGACATGAAATGCCCAACGGAAATCGCCATCAGCGATCGCCGCGAAGCCGAGCTCGCGAAGAA
TGGCTTTATGCCGTTAGTTCACCGCAAAAACTCTGACTTTGCCGCCTTTATCGGCGCCCAGTCGCTGCAAAAACCTGCGG
AGTACCACGATGCTGACGCCACCGCCAATGCGCGTCTGGCAGCGCGACTGCCTTATCTGTTCGCCTGCTGCCGTTTCGCT
CACTACCTGAAGTGTATTGTGCGCGACAAGATCGGTTCGTTCCGCGAGCGCGACGAAATGGAACGCTGGCTGAATGACTG
GGTCATGAACTATGTTGATGGTGACCCGGCTAACTCTTCTCAGGAAACCAAATCACGCAAGCCACTGGCTGCGGCTGAGG
TGAATGTGGAAGAGCAGGAAGACAACCCAGGTTATTACGCCGCGAAATTCTTCCTGCGTCCGCATTACCAGCTGGAAGGG
TTAACCGTTTCGCTGCGTCTGGTATCGAAACTGCCTTCGCTGAAGTCGAACGAAAACTAA