Detailed information of component protein


Summary

Component ID T6CP015457
Component protein type TssK
T6SS ID (Type) T6SS01222 experimental (Type i3)
Strain Pantoea ananatis LMG 2665
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) N454_00636
Coordinate (Strand) 41430..42776 (-)
NCBI ID 574093491
GenBank KF590027
Uniprot ID W8DUE1_PANAN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 4.3e-148 21..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MIMNRAEKVVWAEGMFLRPHHFQQAENFLQSSLREWGQSQRPYVWGFFDLEFDEALLRQGKLALSAASGCLPDGTFFAFSQPQHGPAPLDVPSNTDRAKVVLAIPARRNGREAVTFQDAPDSLARYLAWEAEVEDDNAQAVGTATVQFGKLRLRLMLEQDLTAEWTAMGVAQIVEKRSDNHIRLDNDYIPPTLTLAGSRPLQSMMTDLHGMIQQRSQQLSQRAPGTGRFNSADMVDFMLLALLNRQLGLHAHLQHLPLLHPETLYSHWLQLAAELATWTEARTPDAFPLYDHDDLQGCFSRLTLLLRQGLSQVMEESAIQLPLTQRSHGLNVATVPDNSMVREFGFVLAVKANVPADALKTHFPAQMKVAPVTKIRDLVQLQLPGLALKAMPGAPPQIPWHAGYSYFELDKNSELWQEMERSGAFALHLAGEFPGLNMEFWAIRSQSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9917 - -


  Protein sequence: 449 a.a.    

>T6CP015457 KF590027:c42776-41430 [Pantoea ananatis LMG 2665] [TssK]
MIMNRAEKVVWAEGMFLRPHHFQQAENFLQSSLREWGQSQRPYVWGFFDLEFDEALLRQGKLALSAASGCLPDGTFFAFS
QPQHGPAPLDVPSNTDRAKVVLAIPARRNGREAVTFQDAPDSLARYLAWEAEVEDDNAQAVGTATVQFGKLRLRLMLEQD
LTAEWTAMGVAQIVEKRSDNHIRLDNDYIPPTLTLAGSRPLQSMMTDLHGMIQQRSQQLSQRAPGTGRFNSADMVDFMLL
ALLNRQLGLHAHLQHLPLLHPETLYSHWLQLAAELATWTEARTPDAFPLYDHDDLQGCFSRLTLLLRQGLSQVMEESAIQ
LPLTQRSHGLNVATVPDNSMVREFGFVLAVKANVPADALKTHFPAQMKVAPVTKIRDLVQLQLPGLALKAMPGAPPQIPW
HAGYSYFELDKNSELWQEMERSGAFALHLAGEFPGLNMEFWAIRSQSE*

  Nucleotide sequence: 1347 bp    

>T6CP015457 KF590027:c42776-41430 [Pantoea ananatis LMG 2665] [TssK]
ATGATTATGAACAGAGCCGAAAAGGTTGTTTGGGCGGAAGGGATGTTTTTACGTCCTCACCATTTCCAGCAGGCAGAAAA
CTTTCTGCAAAGCTCGCTGCGTGAATGGGGCCAGTCGCAACGCCCTTATGTTTGGGGATTTTTCGATCTCGAATTTGATG
AAGCGCTGTTGCGGCAGGGTAAACTGGCACTGAGCGCCGCCAGTGGATGCCTGCCGGATGGAACGTTTTTTGCCTTCAGT
CAGCCACAACACGGCCCTGCGCCGCTGGACGTTCCCAGCAATACCGACCGCGCCAAAGTGGTTTTGGCCATTCCCGCTCG
CCGCAATGGTCGCGAGGCGGTGACGTTTCAGGACGCGCCTGATTCGCTGGCTCGCTATCTGGCCTGGGAAGCGGAAGTTG
AAGATGACAATGCGCAGGCTGTCGGAACGGCCACCGTTCAGTTTGGCAAGCTACGCCTCCGCTTGATGCTGGAGCAGGAT
CTCACGGCGGAATGGACGGCGATGGGCGTTGCTCAGATCGTTGAAAAGCGCAGCGACAACCATATCCGTTTAGACAATGA
TTATATCCCTCCCACGTTAACCCTTGCTGGCAGTCGTCCGCTTCAGAGCATGATGACCGACCTGCACGGCATGATTCAAC
AACGTAGCCAGCAGCTGAGCCAGCGCGCACCCGGAACGGGCCGCTTTAACAGCGCGGATATGGTTGATTTTATGCTGCTG
GCGTTGCTTAACCGCCAGTTGGGCCTTCATGCGCATCTGCAGCATCTGCCGTTATTACATCCCGAAACCCTCTACAGCCA
CTGGCTGCAGCTGGCTGCTGAGCTGGCAACGTGGACAGAGGCGCGTACGCCGGATGCTTTCCCTCTCTATGACCACGACG
ACCTGCAGGGCTGCTTCTCGCGCCTGACGCTATTGCTTCGTCAGGGCCTGTCGCAGGTGATGGAAGAGAGCGCCATTCAG
TTGCCGCTGACGCAACGCTCACACGGCCTGAATGTGGCGACCGTGCCGGATAACAGCATGGTGCGTGAATTCGGTTTTGT
GCTGGCCGTAAAAGCAAACGTCCCGGCCGACGCGCTGAAAACGCATTTCCCGGCGCAGATGAAAGTCGCCCCCGTCACCA
AAATTCGCGATCTCGTCCAACTGCAGCTACCAGGCCTTGCCCTGAAAGCCATGCCGGGGGCGCCACCGCAGATCCCATGG
CACGCAGGATACAGCTATTTTGAGCTGGATAAGAACAGCGAGCTATGGCAGGAGATGGAGCGATCGGGTGCCTTCGCGCT
GCACCTTGCCGGTGAGTTTCCGGGCCTGAACATGGAGTTCTGGGCCATTCGCAGTCAGTCAGAATAA