Detailed information of component protein


Summary

Component ID T6CP015453
Component protein type TssA
T6SS ID (Type) T6SS01222 experimental (Type i3)
Strain Pantoea ananatis LMG 2665
Replicon chromosome
Sequence Protein sequence (341 a.a.); Nucleotide sequence (1023 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) N454_00632
Coordinate (Strand) 34781..35803 (-)
NCBI ID 574093487
GenBank KF590027
Uniprot ID W8DUB8_PANAN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.9e-36 11..131
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-340 MSIDIDTLLIPVSHDNPCGENLEYDADFQAMEQASVGKAEQQFGNTIIPAEPADWNKVEKLALELMSRSKDLRVMLTLTHAWTRLKGLPGYAQGLQLIEQAMLQFWEPLWPRLEEDGEHDPFYRINALAVLGDQSALTAAVRQSWLMRYASDGITLRDASALCDGSKTEVPDYPGGLPRLNDELARGEQLGIAAIQNIAERLQNIRRIVIEKLDETALPDMSQLQRSMAMLNERCQATDMESLHSLAAAMQSAPATEQQPSVAAPRAATDWRSAQLNSRAEAQLMLEKVKQYFSQHEPSHPAPLMIDRVQRLIELDFMDIIRDLAPDGVHQLENIFGRRD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9913 - -


  Protein sequence: 341 a.a.    

>T6CP015453 KF590027:c35803-34781 [Pantoea ananatis LMG 2665] [TssA]
MSIDIDTLLIPVSHDNPCGENLEYDADFQAMEQASVGKAEQQFGNTIIPAEPADWNKVEKLALELMSRSKDLRVMLTLTH
AWTRLKGLPGYAQGLQLIEQAMLQFWEPLWPRLEEDGEHDPFYRINALAVLGDQSALTAAVRQSWLMRYASDGITLRDAS
ALCDGSKTEVPDYPGGLPRLNDELARGEQLGIAAIQNIAERLQNIRRIVIEKLDETALPDMSQLQRSMAMLNERCQATDM
ESLHSLAAAMQSAPATEQQPSVAAPRAATDWRSAQLNSRAEAQLMLEKVKQYFSQHEPSHPAPLMIDRVQRLIELDFMDI
IRDLAPDGVHQLENIFGRRD*

  Nucleotide sequence: 1023 bp    

>T6CP015453 KF590027:c35803-34781 [Pantoea ananatis LMG 2665] [TssA]
ATGAGTATTGATATTGACACGTTGCTGATACCGGTAAGCCATGATAATCCGTGCGGTGAAAACCTGGAGTACGACGCGGA
CTTTCAGGCGATGGAGCAGGCCAGCGTGGGAAAAGCCGAACAGCAGTTCGGTAACACCATTATTCCGGCTGAGCCAGCGG
ACTGGAACAAAGTTGAAAAGCTTGCACTGGAACTGATGAGCCGCAGCAAAGACCTGCGTGTCATGCTGACCCTGACACAT
GCCTGGACGCGCCTGAAAGGGTTACCGGGCTATGCACAGGGCCTGCAACTGATTGAACAGGCGATGTTGCAGTTCTGGGA
ACCGCTCTGGCCTCGCCTTGAAGAAGACGGCGAGCACGATCCGTTTTACCGCATCAACGCGCTGGCTGTGCTGGGCGACC
AGTCGGCACTCACGGCCGCCGTTCGTCAGTCATGGCTCATGCGCTATGCGTCCGACGGTATTACGCTGCGTGATGCTTCG
GCGCTGTGTGACGGCAGTAAAACAGAGGTGCCAGATTATCCGGGTGGACTGCCGCGTCTGAATGACGAACTGGCACGAGG
GGAACAACTGGGCATCGCAGCGATTCAAAACATTGCCGAGCGTTTGCAAAATATTCGCCGCATCGTGATTGAAAAGCTGG
ATGAAACGGCCTTGCCGGATATGAGCCAGCTGCAACGCAGCATGGCAATGCTGAATGAGCGCTGTCAGGCCACGGATATG
GAATCGTTACACTCCCTGGCGGCGGCGATGCAATCCGCACCCGCAACTGAGCAGCAGCCCAGCGTCGCTGCACCACGTGC
GGCTACCGACTGGCGCAGTGCCCAACTGAATTCGCGGGCAGAAGCCCAACTTATGCTGGAAAAAGTCAAACAGTACTTTA
GTCAGCATGAGCCGAGCCACCCGGCACCGCTGATGATTGACCGGGTACAGCGCCTTATCGAACTCGATTTTATGGACATC
ATTCGCGATCTCGCGCCCGATGGTGTGCATCAGTTAGAAAACATTTTTGGACGCCGCGACTAA