Detailed information of component protein
Summary
| Component ID | T6CP015446 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01222  (Type i3) |
| Strain | Pantoea ananatis LMG 2665 |
| Replicon | chromosome |
| Sequence | Protein sequence (192 a.a.); Nucleotide sequence (576 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | N454_00617 |
| Coordinate (Strand) | 21278..21853 (-) |
| NCBI ID | 574093477 |
| GenBank | KF590027 |
| Uniprot ID | W8DUB6_PANAN |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 2.7e-19 | 63..167 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-191 | MSRNDNSSGDGYSQLHGGYRARKNRDTLTARDKLQSSLLDRLTDDAPDKTTESGNSSIITHSTLRRNVLRDLQWLFNTINNEAQHDLSDLTEVQRSVLNFGVAPLAGQNISDIEWQDMQRKMTDAILHFEPRILPQGLQVRCVSDLTSLSLHNVLSIEIKGRLWCVPYPLEFLFRTQVDLESGHFELQDAG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9569 | - | - |
Protein sequence: 192 a.a.
>T6CP015446 KF590027:c21853-21278 [Pantoea ananatis LMG 2665] [TssE]
MSRNDNSSGDGYSQLHGGYRARKNRDTLTARDKLQSSLLDRLTDDAPDKTTESGNSSIITHSTLRRNVLRDLQWLFNTIN
NEAQHDLSDLTEVQRSVLNFGVAPLAGQNISDIEWQDMQRKMTDAILHFEPRILPQGLQVRCVSDLTSLSLHNVLSIEIK
GRLWCVPYPLEFLFRTQVDLESGHFELQDAG*
MSRNDNSSGDGYSQLHGGYRARKNRDTLTARDKLQSSLLDRLTDDAPDKTTESGNSSIITHSTLRRNVLRDLQWLFNTIN
NEAQHDLSDLTEVQRSVLNFGVAPLAGQNISDIEWQDMQRKMTDAILHFEPRILPQGLQVRCVSDLTSLSLHNVLSIEIK
GRLWCVPYPLEFLFRTQVDLESGHFELQDAG*
Nucleotide sequence: 576 bp
>T6CP015446 KF590027:c21853-21278 [Pantoea ananatis LMG 2665] [TssE]
ATGAGTCGTAATGACAATTCGTCCGGTGACGGCTATTCGCAGCTGCATGGCGGCTATCGTGCGCGCAAAAATCGCGACAC
GCTGACGGCGCGTGACAAACTGCAGTCGTCCCTGCTGGACAGGCTGACAGACGACGCGCCAGATAAAACCACCGAGTCAG
GCAACAGTTCGATTATTACCCACAGTACGCTGCGACGTAATGTTCTGCGCGATCTCCAGTGGTTATTCAACACCATCAAT
AACGAGGCGCAGCACGATCTGAGCGACCTGACGGAGGTCCAGCGTTCCGTGCTGAATTTTGGCGTGGCCCCCCTGGCCGG
ACAGAATATCTCGGACATCGAGTGGCAGGATATGCAACGGAAAATGACCGATGCCATTCTGCACTTTGAGCCACGCATTT
TACCCCAGGGCTTACAGGTTCGCTGCGTAAGCGACCTGACCTCTCTGAGTCTGCACAACGTACTATCGATTGAGATTAAA
GGCCGGTTATGGTGTGTGCCGTACCCGCTGGAGTTTCTGTTCCGCACTCAGGTTGATTTAGAGAGCGGCCATTTTGAACT
ACAGGATGCAGGTTAA
ATGAGTCGTAATGACAATTCGTCCGGTGACGGCTATTCGCAGCTGCATGGCGGCTATCGTGCGCGCAAAAATCGCGACAC
GCTGACGGCGCGTGACAAACTGCAGTCGTCCCTGCTGGACAGGCTGACAGACGACGCGCCAGATAAAACCACCGAGTCAG
GCAACAGTTCGATTATTACCCACAGTACGCTGCGACGTAATGTTCTGCGCGATCTCCAGTGGTTATTCAACACCATCAAT
AACGAGGCGCAGCACGATCTGAGCGACCTGACGGAGGTCCAGCGTTCCGTGCTGAATTTTGGCGTGGCCCCCCTGGCCGG
ACAGAATATCTCGGACATCGAGTGGCAGGATATGCAACGGAAAATGACCGATGCCATTCTGCACTTTGAGCCACGCATTT
TACCCCAGGGCTTACAGGTTCGCTGCGTAAGCGACCTGACCTCTCTGAGTCTGCACAACGTACTATCGATTGAGATTAAA
GGCCGGTTATGGTGTGTGCCGTACCCGCTGGAGTTTCTGTTCCGCACTCAGGTTGATTTAGAGAGCGGCCATTTTGAACT
ACAGGATGCAGGTTAA