Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS17504 experimental
T6SS type Type i3
Strain Serratia marcescens strain KZ11
Replicon (RefSeq) chromosome (NZ_PQGJ01000003)
Location 455631..479047
Function -
Comment Deletion of T6SS-1 genes had no effect on T6SS-mediated killing, indicating that T6SS-1 is not used to target?E. coli?or is not active under the tested conditions.
References
[1] Steele MI, Motta EVS, Gattu T, Martinez D, Moran NA. et al (2021) The Gut Microbiota Protects Bees from Invasion by a Bacterial Pathogen.. Microbiol Spectr. 9(2):e0039421. [PudMed:34523998]
experimental Experimental investigation has been performed.

T6SS components and genome coordinates

ComponentPAARTagBTagCTssATssBTssCTssDTssETssFTssGTssHTssITssJTssKTssLTssM
Number1111111111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
C3R39_RS13275 451069..451539 + 471 WP_103687199.1 MarR family transcriptional regulator
C3R39_RS13280 451659..452291 + 633 WP_033632650.1 DNA-binding protein
C3R39_RS13285 452576..453538 + 963 WP_103687200.1 hypothetical protein
C3R39_RS13290 453586..454020 - 435 WP_048324175.1 DoxX family protein
T6CP259537 TssA C3R39_RS13295 455631..456596 + 966 WP_004935378.1 type VI secretion system ImpA family N-terminal domain-containing protein
T6CP259538 TssB C3R39_RS13300 (tssB) 456621..457178 + 558 WP_004935376.1 type VI secretion system contractile sheath small subunit
T6CP259539 TssC C3R39_RS13305 (tssC) 457175..458701 + 1527 WP_004935371.1 type VI secretion system contractile sheath large subunit
T6CP259540 TssD C3R39_RS13310 458933..459457 + 525 WP_004935369.1 Hcp family type VI secretion system effector
T6CP259541 TssE C3R39_RS13315 459539..459985 + 447 WP_015378391.1 GPW/gp25 family protein
T6CP259542 TssF C3R39_RS13320 (tssF) 459997..461838 + 1842 WP_004935363.1 type VI secretion system baseplate subunit TssF
T6CP259543 TssG C3R39_RS13325 (tssG) 461831..462859 + 1029 WP_048324170.1 type VI secretion system baseplate subunit TssG
T6CP259544 TssH C3R39_RS13330 (tssH) 462876..465461 + 2586 WP_103687201.1 type VI secretion system ATPase TssH
T6CP259545 TssI C3R39_RS13335 (vgrG) 465526..467787 + 2262 WP_004935351.1 type VI secretion system tip protein VgrG
C3R39_RS13340 467800..470025 + 2226 WP_181008634.1 DUF2169 domain-containing protein
T6CP259546 TagB C3R39_RS13345 470009..471169 + 1161 WP_103687265.1 pentapeptide repeat-containing protein
T6CP259547 TagC C3R39_RS13350 471162..471776 + 615 WP_033632657.1 DUF3540 domain-containing protein
T6CP259548 PAAR C3R39_RS13355 471783..472148 + 366 WP_033632658.1 DUF4150 domain-containing protein
T6CP259549 TssJ C3R39_RS13360 472158..472664 + 507 WP_033632659.1 type VI secretion lipoprotein TssJ
T6CP259550 TssK C3R39_RS13365 (tssK) 472666..474024 + 1359 WP_033632660.1 type VI secretion system baseplate subunit TssK
T6CP259551 TssL C3R39_RS13370 (icmH) 474021..475532 + 1512 WP_021505815.1 type IVB secretion system protein IcmH/DotU
T6CP259552 TssM C3R39_RS13375 (tssM) 475568..479047 + 3480 WP_103687203.1 type VI secretion system membrane subunit TssM
C3R39_RS13380 479073..479426 + 354 WP_033632662.1 DUF6277 family protein
C3R39_RS13385 479693..479920 - 228 WP_004935320.1 hypothetical protein
C3R39_RS13390 480166..480456 + 291 WP_004935318.1 hypothetical protein
C3R39_RS13395 481161..481736 + 576 WP_004935315.1 LuxR family transcriptional regulator
C3R39_RS13400 481845..482714 + 870 WP_103687204.1 hypothetical protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector