Detailed information of component protein


Summary

Component ID T6CP259550
Component protein type TssK
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (453 a.a.); Nucleotide sequence (1359 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13365
Coordinate (Strand) 472666..474024 (+)
NCBI ID WP_033632660.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A0P0QGF4_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 6.4e-109 19..445
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-452 MLPKQRVAWVEGMLMEPQHFQQQERFFEHLIEARLRSVETFTWGFLTLEIDNGLLEQGKFALKKAKGVFPDGTAFSMPEDIPLPPPLVLGEGCQGKVVCLSVLMDIAGNAQIDLIQDARKSSRFRTMDAEVPDRNHGVSLEGTPRVCTMQLGSLVTRLSLEDAVSSAESVLPVGFVREITSDRRVLLDERALPPMLDFRAIGWLPAFTTELLGLISQRLESVFRPDVHMTIGGLSELLELLLLQTLSEFNLRISQLLASPQVHPETLFDTLLSLLGRLSIIPGGERLWDRADLVYLHDEPHNCYFQLFASIRRALSLVIEAPAVALPFVDRGDSIYLCPNDSQLRLEKLVFAVSCGLSIEHLRSYFPAQVKLGPVEKIIQLIDLQLPGARLLPMASPPRHIPYYPNSIYFEVDHADPIYKEMMAGSAMALSIVGDFPDLRFDVWGLRQGRVG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9973 - -


  Protein sequence: 453 a.a.    

>T6CP259550 NZ_PQGJ01000003:472666-474024 [Serratia marcescens] [TssK]
MLPKQRVAWVEGMLMEPQHFQQQERFFEHLIEARLRSVETFTWGFLTLEIDNGLLEQGKFALKKAKGVFPDGTAFSMPED
IPLPPPLVLGEGCQGKVVCLSVLMDIAGNAQIDLIQDARKSSRFRTMDAEVPDRNHGVSLEGTPRVCTMQLGSLVTRLSL
EDAVSSAESVLPVGFVREITSDRRVLLDERALPPMLDFRAIGWLPAFTTELLGLISQRLESVFRPDVHMTIGGLSELLEL
LLLQTLSEFNLRISQLLASPQVHPETLFDTLLSLLGRLSIIPGGERLWDRADLVYLHDEPHNCYFQLFASIRRALSLVIE
APAVALPFVDRGDSIYLCPNDSQLRLEKLVFAVSCGLSIEHLRSYFPAQVKLGPVEKIIQLIDLQLPGARLLPMASPPRH
IPYYPNSIYFEVDHADPIYKEMMAGSAMALSIVGDFPDLRFDVWGLRQGRVG*

  Nucleotide sequence: 1359 bp    

>T6CP259550 NZ_PQGJ01000003:472666-474024 [Serratia marcescens] [TssK]
ATGTTACCTAAACAACGCGTCGCCTGGGTAGAAGGCATGTTGATGGAACCGCAGCATTTCCAGCAGCAGGAACGTTTTTT
CGAGCACTTGATTGAAGCGCGCTTGCGCAGCGTCGAAACCTTCACCTGGGGGTTCCTGACGCTGGAGATCGACAACGGGC
TATTGGAACAGGGCAAGTTTGCGCTGAAGAAAGCCAAGGGCGTTTTCCCCGACGGCACGGCGTTCAGCATGCCTGAGGAT
ATTCCGCTGCCGCCGCCGCTGGTGCTGGGAGAAGGCTGCCAGGGGAAAGTGGTGTGCCTGTCCGTGCTGATGGACATCGC
CGGCAATGCCCAGATCGATCTTATCCAGGATGCGCGAAAAAGCAGCCGTTTTCGCACCATGGACGCCGAGGTGCCGGATC
GCAACCACGGCGTCAGCCTGGAGGGAACGCCGCGCGTGTGCACGATGCAACTGGGCAGCCTGGTGACGCGGCTAAGCCTG
GAGGACGCGGTCAGCAGCGCGGAAAGCGTGCTGCCGGTCGGTTTCGTGCGGGAGATCACCAGCGATCGTCGGGTGCTGCT
GGATGAGCGCGCCTTGCCGCCGATGCTGGATTTCCGCGCCATCGGCTGGCTGCCCGCTTTCACCACCGAATTGCTTGGGC
TGATCAGCCAGCGTCTGGAGTCGGTTTTCCGCCCGGACGTGCATATGACGATCGGCGGGCTTTCCGAGCTGCTGGAGTTG
CTGTTGCTGCAAACCTTGAGCGAGTTCAATTTGCGCATCAGCCAACTGCTGGCCAGCCCGCAGGTGCATCCTGAAACCCT
GTTCGACACGTTGCTGAGCCTGCTGGGGCGGCTCAGCATCATTCCCGGCGGCGAACGCCTCTGGGATCGGGCCGATCTGG
TGTATCTGCACGATGAACCGCACAACTGCTACTTCCAGCTGTTCGCCTCGATTCGCCGCGCGCTGTCGCTGGTGATCGAA
GCGCCGGCGGTGGCGTTGCCGTTTGTCGATCGCGGCGACAGCATTTATCTGTGCCCGAACGACTCGCAGCTGCGCCTGGA
AAAACTGGTGTTCGCCGTCAGCTGCGGTTTGTCCATCGAGCATCTGCGCTCGTATTTCCCCGCACAGGTCAAACTGGGGC
CGGTCGAGAAAATCATTCAGCTGATCGATCTGCAATTACCGGGCGCTCGCTTGCTCCCGATGGCTTCGCCGCCACGGCAC
ATACCGTATTACCCGAACAGCATCTATTTCGAGGTTGATCATGCCGACCCGATTTATAAGGAAATGATGGCCGGCTCGGC
GATGGCGCTCAGCATCGTGGGTGATTTCCCCGACCTGCGTTTTGACGTCTGGGGATTAAGGCAAGGGAGGGTGGGATGA