Detailed information of component protein


Summary

Component ID T6CP259551
Component protein type TssL
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (504 a.a.); Nucleotide sequence (1512 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13370
Coordinate (Strand) 474021..475532 (+)
NCBI ID WP_021505815.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A0P0QG78_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.6e-37 113..302
OmpA PF00691.22 9.9e-11 368..470
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-288 MNEFERKIREAMAVTRNNATPRLPASGSVGKTTAEIAALSFGARALAAKLRPGSAGVATPPEPKPYEAESVAPESSEPAPGERPAEAAPTSSGLFGRAALSKPGVMMGHWDNPLIAAAIPVLLQVERVRDQKQLNPGAVRAQIVREIQQFQQTLLADHIAPSDVDKLAYLLCSYVDECCMSTLESGELNLSLLVEFYRDAWGGEKCFEHLQAYLAASPRNKAILAFYDLILSLGFEGQYHVMERGAVLLADVRNRLDGYLYSQNPTQTLADAEPSKVVRKATRITPLK
Transmembrane helix 289-308 LLCYGLAIALLAYASAAWYL
Outside 309-503 HDQSRALRNAILAWTPPQPRKINIMETLPQPLPQILSEGWLEVRADPRGWLLIFTSDGAFATGQSKLSEEFKKKRNIERLGEALAPWPGDLEVIGHTDNKPYRNTSNNSNLKLSEARAQTVADKLRESLANSKYNRTVTSVGKGDQEPLDDNATEEGRRRNRRVDILWKIGEREMASPSATLNQAGVAAEVPEDN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.5937 - -


  Protein sequence: 504 a.a.    

>T6CP259551 NZ_PQGJ01000003:474021-475532 [Serratia marcescens] [TssL]
MNEFERKIREAMAVTRNNATPRLPASGSVGKTTAEIAALSFGARALAAKLRPGSAGVATPPEPKPYEAESVAPESSEPAP
GERPAEAAPTSSGLFGRAALSKPGVMMGHWDNPLIAAAIPVLLQVERVRDQKQLNPGAVRAQIVREIQQFQQTLLADHIA
PSDVDKLAYLLCSYVDECCMSTLESGELNLSLLVEFYRDAWGGEKCFEHLQAYLAASPRNKAILAFYDLILSLGFEGQYH
VMERGAVLLADVRNRLDGYLYSQNPTQTLADAEPSKVVRKATRITPLKLLCYGLAIALLAYASAAWYLHDQSRALRNAIL
AWTPPQPRKINIMETLPQPLPQILSEGWLEVRADPRGWLLIFTSDGAFATGQSKLSEEFKKKRNIERLGEALAPWPGDLE
VIGHTDNKPYRNTSNNSNLKLSEARAQTVADKLRESLANSKYNRTVTSVGKGDQEPLDDNATEEGRRRNRRVDILWKIGE
REMASPSATLNQAGVAAEVPEDN*

  Nucleotide sequence: 1512 bp    

>T6CP259551 NZ_PQGJ01000003:474021-475532 [Serratia marcescens] [TssL]
ATGAACGAATTTGAGAGAAAAATACGCGAGGCGATGGCGGTAACGCGCAACAACGCGACGCCGCGCCTTCCCGCGTCCGG
CTCTGTGGGCAAAACGACGGCGGAGATCGCCGCGCTGTCCTTCGGCGCGCGGGCGCTGGCCGCCAAGCTGCGGCCGGGAA
GCGCCGGGGTGGCGACGCCCCCCGAACCCAAGCCTTATGAGGCTGAAAGCGTTGCGCCGGAAAGCAGCGAGCCCGCGCCG
GGCGAGCGCCCGGCCGAGGCCGCGCCGACCTCGAGCGGGCTGTTCGGCCGCGCCGCGCTGAGCAAGCCCGGCGTGATGAT
GGGCCATTGGGACAACCCGCTGATCGCCGCCGCCATCCCGGTTCTGCTCCAGGTGGAGCGGGTGCGCGATCAGAAACAGC
TGAATCCGGGCGCGGTGCGCGCGCAGATCGTGCGCGAGATCCAACAATTCCAGCAGACGCTGCTGGCGGATCACATCGCG
CCGAGCGATGTGGACAAGCTGGCCTATCTGCTGTGCTCCTACGTGGATGAGTGCTGCATGAGCACGCTCGAATCCGGCGA
ACTGAATCTCAGCCTGCTGGTGGAGTTTTATCGCGACGCCTGGGGCGGGGAAAAGTGCTTCGAGCACCTGCAGGCCTATC
TGGCCGCCTCGCCGCGCAACAAGGCGATCCTGGCGTTTTACGATCTGATCCTGTCGCTGGGCTTCGAAGGGCAATATCAC
GTGATGGAACGCGGCGCGGTGCTGTTGGCCGACGTGCGCAACCGTCTTGACGGCTATCTGTACAGCCAGAACCCGACGCA
GACGCTGGCCGATGCCGAGCCGAGCAAAGTGGTGCGCAAGGCGACCCGCATCACGCCGCTGAAGCTGCTGTGCTACGGCC
TGGCCATCGCGCTGCTGGCGTATGCCTCGGCCGCCTGGTATCTGCACGATCAGTCCCGCGCGCTGCGCAACGCCATTTTG
GCCTGGACGCCGCCGCAGCCGCGCAAAATCAACATCATGGAGACGCTGCCGCAGCCGCTGCCGCAAATCCTCAGCGAAGG
GTGGCTGGAGGTGCGCGCCGATCCGCGCGGCTGGCTGTTGATCTTCACCTCTGACGGCGCGTTCGCCACCGGGCAGTCGA
AGTTGTCGGAAGAGTTTAAAAAGAAACGCAACATCGAGCGTTTGGGGGAAGCGCTGGCGCCGTGGCCGGGCGATCTGGAG
GTCATCGGGCATACCGACAACAAACCGTATCGCAACACCTCCAACAACTCCAATCTGAAACTGTCCGAGGCCCGCGCGCA
GACGGTGGCCGACAAGCTGCGCGAATCCTTGGCCAACAGTAAATACAACCGCACCGTGACATCGGTCGGCAAGGGCGATC
AGGAGCCGCTGGACGACAACGCGACGGAAGAAGGGCGCCGCCGCAACCGCCGCGTGGACATCCTTTGGAAAATCGGCGAG
AGGGAGATGGCTTCACCGTCTGCAACGTTAAATCAGGCAGGGGTAGCCGCCGAGGTCCCCGAGGATAACTAA