Detailed information of component protein


Summary

Component ID T6CP259542
Component protein type TssF
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (614 a.a.); Nucleotide sequence (1842 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13320
Coordinate (Strand) 459997..461838 (+)
NCBI ID WP_004935363.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A6M5ICV3_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3.2e-123 3..600
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-613 MFSERFLQLYNDELRYFREAGRQFASSHPQVAQHLGMHIDGVLDPFVERLLEGSAFLCTRIQEKLNNEQPEFALQMLSRLAPLWYTPVPAIATVAIKPDLSFPQWHSQVDLPRGSRMTLNDISLNNKPATFTTARHIKVQPVEISLAECEILPPHHLPDGAARHMQDCSAYVRICLTTHGVLPVSELDLEPLHLTLAEDTVRANQLLAALLNRTLRIVLWAKSDDRPIVKVLPPDSLRLGGVSDEEALLPTVVGELPGNRLMREYFAAPSRFFSLELHGVQDFLRQCERVHEFEILFALEQRPLTLIGRVNARDFHLFATPVINLYRRHCSPVLLTDERTEHQLVVDRLNTSLYEIHSVKQVKGMLPDGNPVIFSSLQADVQYDCEREPAGYTLHRRREPSPSKYNNPHLPNEDTFIAISPGKSGIDIDDITSLSVEALVCERHLVPAHLQQPHFQLETAMPIHQVEIVRYPSNPVAVPNISQAWQAIQMLASNPLRHARPDVQDCSALLRDWLSLFCHQDDSSQRKRIASIKNAWVEHHFERNQGPGPLAWIRGAEIAVNLSANHHADHGAYLFGKILHHALSQYGDLNQTLSMKLLLDGETHADWGALYYG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9861 - -


  Protein sequence: 614 a.a.    

>T6CP259542 NZ_PQGJ01000003:459997-461838 [Serratia marcescens] [TssF]
MFSERFLQLYNDELRYFREAGRQFASSHPQVAQHLGMHIDGVLDPFVERLLEGSAFLCTRIQEKLNNEQPEFALQMLSRL
APLWYTPVPAIATVAIKPDLSFPQWHSQVDLPRGSRMTLNDISLNNKPATFTTARHIKVQPVEISLAECEILPPHHLPDG
AARHMQDCSAYVRICLTTHGVLPVSELDLEPLHLTLAEDTVRANQLLAALLNRTLRIVLWAKSDDRPIVKVLPPDSLRLG
GVSDEEALLPTVVGELPGNRLMREYFAAPSRFFSLELHGVQDFLRQCERVHEFEILFALEQRPLTLIGRVNARDFHLFAT
PVINLYRRHCSPVLLTDERTEHQLVVDRLNTSLYEIHSVKQVKGMLPDGNPVIFSSLQADVQYDCEREPAGYTLHRRREP
SPSKYNNPHLPNEDTFIAISPGKSGIDIDDITSLSVEALVCERHLVPAHLQQPHFQLETAMPIHQVEIVRYPSNPVAVPN
ISQAWQAIQMLASNPLRHARPDVQDCSALLRDWLSLFCHQDDSSQRKRIASIKNAWVEHHFERNQGPGPLAWIRGAEIAV
NLSANHHADHGAYLFGKILHHALSQYGDLNQTLSMKLLLDGETHADWGALYYG*

  Nucleotide sequence: 1842 bp    

>T6CP259542 NZ_PQGJ01000003:459997-461838 [Serratia marcescens] [TssF]
ATGTTCAGTGAGCGCTTTCTCCAATTATATAATGATGAGCTGCGTTATTTTCGCGAGGCCGGTCGTCAGTTCGCCTCTTC
TCATCCCCAGGTCGCCCAGCATTTAGGCATGCATATCGACGGCGTGCTGGATCCTTTCGTTGAGCGTCTGTTGGAGGGCT
CCGCGTTCCTTTGCACCCGCATCCAGGAAAAGCTGAACAATGAGCAGCCGGAATTTGCCCTGCAAATGCTCTCACGCCTG
GCGCCGCTGTGGTATACGCCGGTTCCCGCGATCGCCACCGTCGCGATTAAGCCCGATCTCTCTTTTCCCCAGTGGCACAG
CCAGGTTGACCTGCCGCGCGGGAGCCGCATGACCCTCAACGATATCTCGCTGAACAACAAACCCGCCACGTTCACCACGG
CGCGGCATATTAAAGTGCAGCCGGTTGAGATTTCACTGGCGGAATGCGAGATTTTGCCGCCGCACCATTTGCCTGACGGC
GCCGCCAGACACATGCAGGATTGCTCGGCCTACGTCAGGATATGCCTGACGACGCACGGCGTGCTTCCCGTCTCGGAGCT
GGATCTCGAGCCGCTGCACCTGACGCTGGCGGAAGATACGGTGCGGGCCAATCAACTGCTGGCCGCGTTGCTTAATCGCA
CCTTGCGCATCGTGCTATGGGCGAAAAGCGACGACCGGCCAATCGTCAAAGTCCTGCCGCCGGACAGCTTGCGCCTGGGC
GGCGTCAGCGATGAAGAGGCCTTGTTGCCCACCGTGGTGGGGGAATTGCCCGGCAACCGGCTGATGCGCGAATACTTCGC
CGCGCCAAGCCGCTTCTTCAGCCTGGAGTTGCATGGCGTGCAGGATTTTCTGCGTCAATGTGAACGCGTTCACGAGTTCG
AGATCTTGTTCGCGCTGGAGCAACGCCCACTCACTCTGATCGGTCGCGTCAACGCCAGGGATTTTCATCTTTTCGCGACC
CCGGTCATCAACCTGTATCGCCGCCATTGCTCGCCGGTGCTGCTGACGGATGAGCGCACGGAGCACCAGCTGGTGGTCGA
TCGTTTGAACACCTCGCTGTATGAGATACACAGCGTAAAACAGGTGAAAGGCATGCTGCCCGACGGCAACCCGGTGATTT
TCTCTTCGCTGCAGGCCGACGTGCAGTACGACTGCGAGCGGGAGCCGGCCGGTTATACGCTGCACCGTCGCCGGGAGCCG
TCGCCCTCCAAGTACAACAATCCGCACCTGCCCAACGAAGATACCTTCATCGCCATCTCGCCGGGCAAAAGCGGCATCGA
CATCGACGACATCACGTCGCTCAGCGTCGAGGCGCTGGTCTGCGAACGGCATCTGGTGCCGGCGCACCTTCAGCAGCCGC
ATTTCCAGCTGGAAACGGCGATGCCGATCCACCAGGTGGAGATCGTCCGCTACCCGAGCAACCCGGTCGCGGTGCCGAAC
ATCAGCCAGGCGTGGCAGGCGATTCAGATGCTGGCCTCCAATCCTTTGCGCCATGCGCGCCCCGACGTTCAGGATTGTTC
GGCGCTGTTGCGCGACTGGCTGTCGTTGTTCTGCCATCAGGATGACTCCAGCCAGCGCAAGCGCATCGCCAGCATCAAAA
ACGCCTGGGTGGAGCACCACTTCGAGCGCAATCAGGGGCCGGGGCCGCTGGCCTGGATCCGCGGGGCCGAGATCGCCGTC
AACTTAAGCGCCAACCATCATGCCGACCACGGCGCCTATCTGTTCGGCAAAATATTGCACCACGCGTTGAGCCAATACGG
CGACCTGAACCAAACGTTAAGCATGAAGCTGTTGCTGGATGGGGAAACCCACGCCGACTGGGGGGCGCTCTACTATGGCT
GA