Detailed information of component protein
Summary
| Component ID | T6CP259547 |
| Component protein type | TagC |
| T6SS ID (Type) | T6SS17504  (Type i3) |
| Strain | Serratia marcescens strain KZ11 |
| Replicon | chromosome |
| Sequence | Protein sequence (205 a.a.); Nucleotide sequence (615 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | C3R39_RS13350 |
| Coordinate (Strand) | 471162..471776 (+) |
| NCBI ID | WP_033632657.1 |
| RefSeq | NZ_PQGJ01000003 |
| Uniprot ID | A0A0N7JPX8_SERMA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DUF3540 | PF12059.10 | 3.4e-12 | 132..204 |
| DUF3540 | PF12059.10 | 9.7e-07 | 58..127 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-204 | MYKSRREHQKVYANARVTPLQLVRSAPLAEQGGRKVVTLAADANGGLYVDGMRAHCLAVATSCLVQPLAGDRVCVIADGDKLVITEILSRQQANAVMTLDSRCANLRIVAPEIELQGGKRLTLRSPHFTLLTRSSRWVAETLHQISQRLFVRSKHASRRVEETDEVLAKHIIQDARQSLVITSEIGSLKSSAVLKIDGGQIHMG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.8128 | - | - |
Protein sequence: 205 a.a.
>T6CP259547 NZ_PQGJ01000003:471162-471776 [Serratia marcescens] [TagC]
MYKSRREHQKVYANARVTPLQLVRSAPLAEQGGRKVVTLAADANGGLYVDGMRAHCLAVATSCLVQPLAGDRVCVIADGD
KLVITEILSRQQANAVMTLDSRCANLRIVAPEIELQGGKRLTLRSPHFTLLTRSSRWVAETLHQISQRLFVRSKHASRRV
EETDEVLAKHIIQDARQSLVITSEIGSLKSSAVLKIDGGQIHMG*
MYKSRREHQKVYANARVTPLQLVRSAPLAEQGGRKVVTLAADANGGLYVDGMRAHCLAVATSCLVQPLAGDRVCVIADGD
KLVITEILSRQQANAVMTLDSRCANLRIVAPEIELQGGKRLTLRSPHFTLLTRSSRWVAETLHQISQRLFVRSKHASRRV
EETDEVLAKHIIQDARQSLVITSEIGSLKSSAVLKIDGGQIHMG*
Nucleotide sequence: 615 bp
>T6CP259547 NZ_PQGJ01000003:471162-471776 [Serratia marcescens] [TagC]
ATGTATAAGTCCAGAAGAGAGCATCAGAAGGTCTATGCCAACGCCAGGGTGACGCCTTTGCAGTTGGTGCGCAGCGCTCC
GCTTGCCGAACAAGGGGGGCGCAAGGTGGTGACGCTGGCGGCCGACGCCAACGGCGGTCTGTATGTCGACGGCATGCGAG
CCCATTGTCTGGCGGTCGCCACCAGCTGTCTGGTTCAGCCGCTGGCGGGCGATCGCGTTTGCGTCATCGCCGACGGCGAT
AAGTTGGTCATCACCGAGATCCTGTCGCGGCAACAGGCGAACGCCGTCATGACGCTGGACAGCCGCTGCGCCAACTTGCG
CATCGTGGCGCCGGAGATCGAGCTGCAGGGCGGCAAGCGGCTGACGTTGCGCAGCCCGCACTTCACGCTGCTGACGCGCA
GCAGCCGTTGGGTCGCCGAAACGCTGCACCAAATCTCTCAACGCCTGTTTGTGCGCAGCAAGCACGCGAGCCGGCGGGTG
GAGGAAACCGACGAGGTGCTGGCGAAGCACATCATTCAGGATGCGCGGCAATCCCTCGTCATCACCAGTGAAATTGGTTC
CCTGAAGTCTTCGGCGGTGCTGAAGATCGACGGCGGCCAGATACATATGGGGTAA
ATGTATAAGTCCAGAAGAGAGCATCAGAAGGTCTATGCCAACGCCAGGGTGACGCCTTTGCAGTTGGTGCGCAGCGCTCC
GCTTGCCGAACAAGGGGGGCGCAAGGTGGTGACGCTGGCGGCCGACGCCAACGGCGGTCTGTATGTCGACGGCATGCGAG
CCCATTGTCTGGCGGTCGCCACCAGCTGTCTGGTTCAGCCGCTGGCGGGCGATCGCGTTTGCGTCATCGCCGACGGCGAT
AAGTTGGTCATCACCGAGATCCTGTCGCGGCAACAGGCGAACGCCGTCATGACGCTGGACAGCCGCTGCGCCAACTTGCG
CATCGTGGCGCCGGAGATCGAGCTGCAGGGCGGCAAGCGGCTGACGTTGCGCAGCCCGCACTTCACGCTGCTGACGCGCA
GCAGCCGTTGGGTCGCCGAAACGCTGCACCAAATCTCTCAACGCCTGTTTGTGCGCAGCAAGCACGCGAGCCGGCGGGTG
GAGGAAACCGACGAGGTGCTGGCGAAGCACATCATTCAGGATGCGCGGCAATCCCTCGTCATCACCAGTGAAATTGGTTC
CCTGAAGTCTTCGGCGGTGCTGAAGATCGACGGCGGCCAGATACATATGGGGTAA