Detailed information of component protein


Summary

Component ID T6CP259538
Component protein type TssB
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (186 a.a.); Nucleotide sequence (558 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) C3R39_RS13300
Coordinate (Strand) 456621..457178 (+)
NCBI ID WP_004935376.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A0P0QGB6_SERMA
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 4.7e-54 13..163

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-185 MAKDSSSQKFIGKNNAPRVQIEYDVELYGSQKKVELPFVTGVMSDLSGHRKKPLLPIEERKFLTFDQDNFNDRMRAIKPRLQFYVENTLSEDDALLDVELEFESMDDFTPGAIAKRVPQMQRLLEAREHLTELITYMDGKSSAEEVVKNLLEKPDFLHRLVTDARKTVADAEQDVQDPGNKGDEE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -



  Protein sequence: 186 a.a.    

>T6CP259538 NZ_PQGJ01000003:456621-457178 [Serratia marcescens] [TssB]
MAKDSSSQKFIGKNNAPRVQIEYDVELYGSQKKVELPFVTGVMSDLSGHRKKPLLPIEERKFLTFDQDNFNDRMRAIKPR
LQFYVENTLSEDDALLDVELEFESMDDFTPGAIAKRVPQMQRLLEAREHLTELITYMDGKSSAEEVVKNLLEKPDFLHRL
VTDARKTVADAEQDVQDPGNKGDEE*

  Nucleotide sequence: 558 bp    

>T6CP259538 NZ_PQGJ01000003:456621-457178 [Serratia marcescens] [TssB]
ATGGCTAAGGACTCAAGCTCTCAGAAATTTATCGGTAAAAATAACGCGCCGCGCGTGCAAATTGAATATGACGTAGAGCT
TTACGGTTCACAAAAGAAAGTGGAGTTGCCCTTTGTTACGGGGGTCATGTCCGATCTCTCTGGGCATCGGAAAAAGCCTT
TGCTGCCGATCGAAGAGCGGAAATTCCTGACCTTCGATCAGGACAACTTCAACGATCGCATGCGCGCCATCAAGCCTCGT
CTGCAATTTTACGTAGAGAACACCCTGAGCGAAGACGATGCGTTGCTGGACGTGGAATTGGAGTTTGAATCGATGGATGA
CTTCACGCCTGGCGCCATCGCCAAACGGGTTCCGCAGATGCAACGCCTGCTTGAAGCCCGGGAGCATCTCACGGAGCTGA
TCACCTATATGGATGGTAAATCCAGCGCGGAAGAGGTGGTGAAGAATCTGCTGGAGAAACCCGATTTTCTGCATCGTTTA
GTGACGGATGCGCGTAAAACGGTCGCGGATGCGGAACAGGATGTGCAGGATCCCGGCAATAAAGGAGATGAGGAATGA