Detailed information of component protein


Summary

Component ID T6CP259541
Component protein type TssE
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (149 a.a.); Nucleotide sequence (447 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) C3R39_RS13315
Coordinate (Strand) 459539..459985 (+)
NCBI ID WP_015378391.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A086GCW1_9GAMM, A0A7C8GKA6_9ENTR, A0A0G8BEC3_SERMA
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 2.7e-12 27..121

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-148 MKASLPMLFDKLSVRHQSASADNWRRVLVRDIEFLLNDASRSADLKLHDYAHSESSVLNYGLPSLSQRIPINTDPLTLARHIQRIITSFEPRLDPKTIRVVPVVNERQSYVLAILFDIYGTCSLPGDEMLVNLRIALDYSCGAVHVFD



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9594 - -



  Protein sequence: 149 a.a.    

>T6CP259541 NZ_PQGJ01000003:459539-459985 [Serratia marcescens] [TssE]
MKASLPMLFDKLSVRHQSASADNWRRVLVRDIEFLLNDASRSADLKLHDYAHSESSVLNYGLPSLSQRIPINTDPLTLAR
HIQRIITSFEPRLDPKTIRVVPVVNERQSYVLAILFDIYGTCSLPGDEMLVNLRIALDYSCGAVHVFD*

  Nucleotide sequence: 447 bp    

>T6CP259541 NZ_PQGJ01000003:459539-459985 [Serratia marcescens] [TssE]
ATGAAAGCGTCATTGCCCATGCTATTCGATAAGCTCAGCGTGAGACATCAAAGCGCCAGCGCCGATAATTGGCGGCGTGT
TTTGGTGCGTGATATCGAATTTTTACTGAATGACGCATCGCGCAGCGCTGATTTGAAACTTCATGATTATGCGCACAGCG
AAAGCTCGGTATTGAATTATGGCCTGCCGTCGCTGAGCCAACGCATACCGATTAATACCGATCCGTTAACGCTGGCGAGA
CATATACAAAGAATCATTACTTCGTTTGAGCCGCGTCTGGATCCGAAAACGATTCGTGTGGTGCCTGTAGTGAATGAACG
CCAATCGTATGTGCTGGCGATTTTATTCGATATTTATGGCACCTGCTCATTACCGGGTGACGAAATGCTGGTTAATTTGC
GCATCGCTCTTGATTATTCCTGTGGCGCCGTACACGTATTTGATTAA