Detailed information of component protein
Summary
| Component ID | T6CP259541 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS17504  (Type i3) |
| Strain | Serratia marcescens strain KZ11 |
| Replicon | chromosome |
| Sequence | Protein sequence (149 a.a.); Nucleotide sequence (447 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | C3R39_RS13315 |
| Coordinate (Strand) | 459539..459985 (+) |
| NCBI ID | WP_015378391.1 |
| RefSeq | NZ_PQGJ01000003 |
| Uniprot ID | A0A086GCW1_9GAMM, A0A7C8GKA6_9ENTR, A0A0G8BEC3_SERMA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 2.7e-12 | 27..121 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-148 | MKASLPMLFDKLSVRHQSASADNWRRVLVRDIEFLLNDASRSADLKLHDYAHSESSVLNYGLPSLSQRIPINTDPLTLARHIQRIITSFEPRLDPKTIRVVPVVNERQSYVLAILFDIYGTCSLPGDEMLVNLRIALDYSCGAVHVFD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9594 | - | - |
Protein sequence: 149 a.a.
>T6CP259541 NZ_PQGJ01000003:459539-459985 [Serratia marcescens] [TssE]
MKASLPMLFDKLSVRHQSASADNWRRVLVRDIEFLLNDASRSADLKLHDYAHSESSVLNYGLPSLSQRIPINTDPLTLAR
HIQRIITSFEPRLDPKTIRVVPVVNERQSYVLAILFDIYGTCSLPGDEMLVNLRIALDYSCGAVHVFD*
MKASLPMLFDKLSVRHQSASADNWRRVLVRDIEFLLNDASRSADLKLHDYAHSESSVLNYGLPSLSQRIPINTDPLTLAR
HIQRIITSFEPRLDPKTIRVVPVVNERQSYVLAILFDIYGTCSLPGDEMLVNLRIALDYSCGAVHVFD*
Nucleotide sequence: 447 bp
>T6CP259541 NZ_PQGJ01000003:459539-459985 [Serratia marcescens] [TssE]
ATGAAAGCGTCATTGCCCATGCTATTCGATAAGCTCAGCGTGAGACATCAAAGCGCCAGCGCCGATAATTGGCGGCGTGT
TTTGGTGCGTGATATCGAATTTTTACTGAATGACGCATCGCGCAGCGCTGATTTGAAACTTCATGATTATGCGCACAGCG
AAAGCTCGGTATTGAATTATGGCCTGCCGTCGCTGAGCCAACGCATACCGATTAATACCGATCCGTTAACGCTGGCGAGA
CATATACAAAGAATCATTACTTCGTTTGAGCCGCGTCTGGATCCGAAAACGATTCGTGTGGTGCCTGTAGTGAATGAACG
CCAATCGTATGTGCTGGCGATTTTATTCGATATTTATGGCACCTGCTCATTACCGGGTGACGAAATGCTGGTTAATTTGC
GCATCGCTCTTGATTATTCCTGTGGCGCCGTACACGTATTTGATTAA
ATGAAAGCGTCATTGCCCATGCTATTCGATAAGCTCAGCGTGAGACATCAAAGCGCCAGCGCCGATAATTGGCGGCGTGT
TTTGGTGCGTGATATCGAATTTTTACTGAATGACGCATCGCGCAGCGCTGATTTGAAACTTCATGATTATGCGCACAGCG
AAAGCTCGGTATTGAATTATGGCCTGCCGTCGCTGAGCCAACGCATACCGATTAATACCGATCCGTTAACGCTGGCGAGA
CATATACAAAGAATCATTACTTCGTTTGAGCCGCGTCTGGATCCGAAAACGATTCGTGTGGTGCCTGTAGTGAATGAACG
CCAATCGTATGTGCTGGCGATTTTATTCGATATTTATGGCACCTGCTCATTACCGGGTGACGAAATGCTGGTTAATTTGC
GCATCGCTCTTGATTATTCCTGTGGCGCCGTACACGTATTTGATTAA