Detailed information of component protein


Summary

Component ID T6CP259544
Component protein type TssH
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (862 a.a.); Nucleotide sequence (2586 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13330
Coordinate (Strand) 462876..465461 (+)
NCBI ID WP_103687201.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000CCEE1F9
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.1e-35 594..761
AAA_lid_9 PF17871.3 9.6e-27 365..459
AAA PF00004.31 5.8e-10 225..356
ClpB_D2-small PF10431.11 2.9e-08 766..838
Clp_N PF02861.22 1.1e-06 22..73
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-861 VYQRERLFSRLGHFAYQSFVEATKLCRTFRHEYVELEHWLKVLVDKERGDLPLILAHYAINSQRISDALDRILHTLPNRTNAVVDLSTQLETVVERGLLMSQLAETPSGGVRTIHILVGILQDPTLQRSLYRLSDEFKKLPIPQLFDDYPAILAESVEHEEEEEEVYSTHGDAPEASETVDILDKWCADLTRQARDGEIDPVIGREAELRQVIDILLRRRQNNPILVGEAGVGKTAVAEALACKIAQGQVPPLLQGARLLSLDLGRMQAGASMRGEFESRLKALIDAIAHSAVPVILFCDEAHTLVGAGGQAGTGDAVNLLKPMLARGALRMVAATTWSEYKQFIEPDAALTRRFQYVLVSEPDEENAVNMMRAIAPHFAQHHSVKIRESALQAAVHLSLRHLPSRQLPDKAISLLDTACARVALSQHALPEKIESLEAGLAVKRTEMNGLQEESKFDDLALSRITELQQTLSDMEGELAALRQRQAQEQQAVTTLLDAERQSPERLPQLASELGALQDGGLPLVYPWVDDRVVAEVLSDWTGIPTGRMLQSDLDNALNLNQLLSRQIFGQQTAIDEIAQAVRISRAGIQAHDRPLGVFMLSGPSGVGKTETAFALAEAMYGGAHNLIVFNMSEFQESHTVSTLKGAPPGYVGYGKGGKLTEAVRRKPYSIVLLDEFDKAHPDIHEAFYQVFDKGVMEDGEGRMISFRQCFILMTSNIGAGEIEATLAETPDLKTEALRPMLHDVLARFFPAALLARMNVIPYVPLSTEAITHIATKQISRLQQRLHKEVGVSLVLEGDIPGWIAKRISAHPSRGRAVESLLQQAILPPISNEVLQRKRTGQELQNIQLMVENDSLSVYFD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9866 - -


  Protein sequence: 862 a.a.    

>T6CP259544 NZ_PQGJ01000003:462876-465461 [Serratia marcescens] [TssH]
VYQRERLFSRLGHFAYQSFVEATKLCRTFRHEYVELEHWLKVLVDKERGDLPLILAHYAINSQRISDALDRILHTLPNRT
NAVVDLSTQLETVVERGLLMSQLAETPSGGVRTIHILVGILQDPTLQRSLYRLSDEFKKLPIPQLFDDYPAILAESVEHE
EEEEEVYSTHGDAPEASETVDILDKWCADLTRQARDGEIDPVIGREAELRQVIDILLRRRQNNPILVGEAGVGKTAVAEA
LACKIAQGQVPPLLQGARLLSLDLGRMQAGASMRGEFESRLKALIDAIAHSAVPVILFCDEAHTLVGAGGQAGTGDAVNL
LKPMLARGALRMVAATTWSEYKQFIEPDAALTRRFQYVLVSEPDEENAVNMMRAIAPHFAQHHSVKIRESALQAAVHLSL
RHLPSRQLPDKAISLLDTACARVALSQHALPEKIESLEAGLAVKRTEMNGLQEESKFDDLALSRITELQQTLSDMEGELA
ALRQRQAQEQQAVTTLLDAERQSPERLPQLASELGALQDGGLPLVYPWVDDRVVAEVLSDWTGIPTGRMLQSDLDNALNL
NQLLSRQIFGQQTAIDEIAQAVRISRAGIQAHDRPLGVFMLSGPSGVGKTETAFALAEAMYGGAHNLIVFNMSEFQESHT
VSTLKGAPPGYVGYGKGGKLTEAVRRKPYSIVLLDEFDKAHPDIHEAFYQVFDKGVMEDGEGRMISFRQCFILMTSNIGA
GEIEATLAETPDLKTEALRPMLHDVLARFFPAALLARMNVIPYVPLSTEAITHIATKQISRLQQRLHKEVGVSLVLEGDI
PGWIAKRISAHPSRGRAVESLLQQAILPPISNEVLQRKRTGQELQNIQLMVENDSLSVYFD*

  Nucleotide sequence: 2586 bp    

>T6CP259544 NZ_PQGJ01000003:462876-465461 [Serratia marcescens] [TssH]
GTGTATCAACGAGAACGTCTTTTTTCGCGATTGGGCCACTTTGCTTATCAGTCATTCGTCGAAGCGACCAAGCTGTGCCG
AACCTTCAGGCACGAATACGTGGAGCTGGAACACTGGCTGAAAGTCCTGGTGGACAAGGAGCGCGGCGACCTGCCGCTGA
TCCTGGCGCACTACGCCATCAACAGTCAGCGCATCAGCGATGCGTTGGATCGCATTCTGCATACCTTGCCGAACCGCACG
AATGCGGTGGTGGATCTGTCGACGCAACTGGAAACGGTGGTGGAAAGAGGGCTGCTGATGAGCCAGCTCGCCGAAACGCC
GTCCGGCGGGGTGCGCACCATTCATATCCTGGTCGGCATTCTGCAGGATCCCACGTTGCAGCGCAGCCTGTACCGGCTGA
GCGACGAGTTCAAAAAACTGCCGATCCCGCAGCTGTTCGACGATTATCCGGCGATTCTGGCGGAGTCCGTCGAGCATGAG
GAAGAGGAAGAAGAGGTCTACAGCACCCACGGCGATGCGCCGGAGGCGTCCGAGACGGTCGATATTCTCGATAAATGGTG
CGCCGATCTGACCCGCCAGGCGCGCGACGGTGAAATCGACCCGGTGATTGGCCGCGAAGCGGAGCTGCGCCAGGTGATCG
ACATCTTGCTGCGTCGCCGGCAGAACAACCCGATTTTGGTGGGCGAAGCCGGGGTCGGCAAAACGGCGGTGGCGGAAGCG
CTGGCCTGCAAGATAGCCCAGGGGCAGGTGCCGCCGCTGCTGCAGGGCGCCCGGCTGCTGTCTTTGGATCTGGGGCGCAT
GCAGGCCGGGGCGAGCATGAGGGGCGAATTCGAATCGCGCCTGAAAGCGCTGATCGACGCCATCGCGCATTCGGCGGTGC
CGGTGATCCTGTTTTGCGACGAGGCGCATACGCTGGTGGGCGCCGGCGGGCAGGCCGGCACCGGCGACGCCGTCAACCTG
TTGAAACCGATGTTGGCCAGGGGGGCGCTGCGCATGGTGGCGGCGACGACCTGGTCGGAATACAAACAGTTCATCGAGCC
GGACGCCGCGCTGACGCGCCGTTTCCAGTACGTGTTGGTTTCTGAACCCGACGAAGAGAATGCGGTGAACATGATGCGCG
CCATCGCCCCGCATTTTGCGCAGCACCACAGCGTCAAGATCCGCGAGTCGGCGCTGCAGGCCGCGGTGCATTTGTCGCTG
CGCCATCTGCCGTCGCGGCAACTGCCGGACAAAGCCATCAGCTTGCTGGACACCGCCTGCGCGCGGGTGGCGCTGAGCCA
GCATGCGCTGCCTGAAAAAATCGAGTCGCTCGAGGCCGGGTTGGCGGTGAAGCGCACCGAAATGAACGGCCTGCAGGAGG
AGAGCAAATTCGACGATCTGGCGCTCAGCCGCATCACTGAATTGCAGCAGACCCTCAGCGACATGGAAGGCGAACTGGCT
GCGCTGCGTCAGCGGCAGGCGCAGGAGCAACAGGCGGTCACCACCTTGCTCGACGCGGAGCGGCAGTCGCCGGAGCGCTT
GCCGCAGTTGGCCTCCGAGCTGGGAGCCTTGCAAGACGGCGGCCTGCCGTTGGTGTATCCGTGGGTGGATGACCGCGTCG
TGGCGGAGGTGTTGTCGGATTGGACCGGCATCCCCACCGGCCGCATGCTGCAAAGCGATCTGGACAATGCGCTCAATCTC
AATCAACTGCTGAGCCGCCAGATATTCGGCCAGCAGACGGCGATCGATGAAATCGCGCAGGCGGTGCGCATCTCCCGCGC
CGGCATTCAGGCGCACGATCGGCCATTGGGCGTTTTCATGCTGTCCGGCCCGAGCGGCGTCGGCAAAACGGAGACCGCGT
TTGCGCTGGCGGAGGCGATGTACGGCGGCGCGCATAATCTGATCGTCTTCAATATGAGCGAGTTTCAGGAATCGCATACC
GTTTCCACCCTGAAAGGGGCGCCGCCGGGCTATGTCGGCTACGGCAAGGGCGGCAAGTTGACGGAGGCGGTGCGCCGCAA
ACCTTATTCCATCGTCTTGCTCGACGAATTCGACAAGGCGCATCCCGATATCCACGAGGCGTTTTATCAAGTCTTCGACA
AGGGCGTGATGGAAGACGGTGAGGGCCGCATGATCAGCTTCCGCCAGTGTTTCATTTTAATGACGAGCAATATCGGCGCC
GGCGAAATAGAAGCGACGCTGGCGGAAACGCCGGATCTGAAAACCGAAGCGCTGCGGCCGATGCTGCACGACGTGCTGGC
GCGTTTCTTCCCGGCGGCGCTGTTGGCGCGCATGAACGTCATTCCCTACGTGCCGCTTTCTACCGAAGCGATAACCCATA
TCGCCACCAAACAGATTTCGCGTTTACAACAGCGTTTGCACAAAGAAGTGGGCGTGTCGCTGGTGCTGGAAGGCGACATT
CCAGGCTGGATAGCCAAACGCATCAGCGCCCATCCTTCGCGCGGCAGAGCGGTCGAGTCGCTGCTGCAGCAGGCGATTTT
GCCGCCCATCAGCAATGAAGTGCTGCAGCGCAAACGGACGGGACAGGAACTGCAGAATATCCAACTCATGGTCGAGAACG
ATAGTTTAAGTGTTTATTTCGACTGA