Detailed information of component protein
Summary
| Component ID | T6CP259548 |
| Component protein type | PAAR |
| T6SS ID (Type) | T6SS17504  (Type i3) |
| Strain | Serratia marcescens strain KZ11 |
| Replicon | chromosome |
| Sequence | Protein sequence (122 a.a.); Nucleotide sequence (366 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | C3R39_RS13355 |
| Coordinate (Strand) | 471783..472148 (+) |
| NCBI ID | WP_033632658.1 |
| RefSeq | NZ_PQGJ01000003 |
| Uniprot ID | A0A0P0QGF3_SERMA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DUF4150 | PF13665.8 | 8.9e-11 | 19..106 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-121 | MTAANNNMAGISFAGCDPMIPAPGPNTAPNSTGIPNVPNYFLCGGNEQNLGSIRAATVDSGGVIGAASGTHSAQMQPVQGSGKYFTGGMPVTRLGDSSTTNNNNMVATQVAPSQTKCFVNA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.5366 | pos: 15-16. FAG-CD. | MTAANNNMAGISFAG |
Protein sequence: 122 a.a.
>T6CP259548 NZ_PQGJ01000003:471783-472148 [Serratia marcescens] [PAAR]
MTAANNNMAGISFAGCDPMIPAPGPNTAPNSTGIPNVPNYFLCGGNEQNLGSIRAATVDSGGVIGAASGTHSAQMQPVQG
SGKYFTGGMPVTRLGDSSTTNNNNMVATQVAPSQTKCFVNA*
MTAANNNMAGISFAGCDPMIPAPGPNTAPNSTGIPNVPNYFLCGGNEQNLGSIRAATVDSGGVIGAASGTHSAQMQPVQG
SGKYFTGGMPVTRLGDSSTTNNNNMVATQVAPSQTKCFVNA*
Nucleotide sequence: 366 bp
>T6CP259548 NZ_PQGJ01000003:471783-472148 [Serratia marcescens] [PAAR]
ATGACTGCAGCCAATAACAACATGGCCGGGATCAGCTTTGCCGGCTGTGACCCGATGATACCGGCGCCGGGCCCGAACAC
CGCGCCCAACAGCACCGGCATACCGAACGTGCCTAACTATTTCCTATGCGGCGGCAATGAACAGAATCTCGGCAGTATTC
GCGCGGCCACCGTCGATTCGGGCGGGGTGATCGGCGCCGCCTCCGGGACGCATTCGGCCCAGATGCAGCCGGTGCAGGGG
TCGGGCAAGTATTTCACCGGCGGCATGCCGGTCACGCGGCTAGGCGATTCCAGCACGACGAACAATAACAACATGGTCGC
CACTCAGGTCGCGCCCAGCCAGACCAAATGTTTCGTTAATGCATAG
ATGACTGCAGCCAATAACAACATGGCCGGGATCAGCTTTGCCGGCTGTGACCCGATGATACCGGCGCCGGGCCCGAACAC
CGCGCCCAACAGCACCGGCATACCGAACGTGCCTAACTATTTCCTATGCGGCGGCAATGAACAGAATCTCGGCAGTATTC
GCGCGGCCACCGTCGATTCGGGCGGGGTGATCGGCGCCGCCTCCGGGACGCATTCGGCCCAGATGCAGCCGGTGCAGGGG
TCGGGCAAGTATTTCACCGGCGGCATGCCGGTCACGCGGCTAGGCGATTCCAGCACGACGAACAATAACAACATGGTCGC
CACTCAGGTCGCGCCCAGCCAGACCAAATGTTTCGTTAATGCATAG