Detailed information of component protein


Summary

Component ID T6CP259543
Component protein type TssG
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (343 a.a.); Nucleotide sequence (1029 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13325
Coordinate (Strand) 461831..462859 (+)
NCBI ID WP_048324170.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000650C173
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 6.9e-54 38..327
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-342 MADMSLMRETALSLEQAPTPGAQSESAGQAEIRGLSNRQDFFELLRRIERAQPDAPRLGVSNDRSRERLCITQPADMAFASREITSIVQRPKQVLIQARHFGMFAPYGPLPIHVTEHARTEVIARRNQAFQQFVGIVSQRFAVLHYRAWAQLKAMIGHEHDDDKNPFLRHLRQTVGVDTALMVNPHVQRLREAYPGTYLPGRRSLRQLNKMLAAYFAVPITITPRYAKWIDDGKQSGSQKLGKLGSTRIGSRFFDAQYGAHIQIGPLGAPQYQQYQRGSRRLQALVSICHDFTSHQLMLDVSLLIATEPGMAAQLGGKSLSKDSWLKPKTGTFRQLVYQSTT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9810 - -


  Protein sequence: 343 a.a.    

>T6CP259543 NZ_PQGJ01000003:461831-462859 [Serratia marcescens] [TssG]
MADMSLMRETALSLEQAPTPGAQSESAGQAEIRGLSNRQDFFELLRRIERAQPDAPRLGVSNDRSRERLCITQPADMAFA
SREITSIVQRPKQVLIQARHFGMFAPYGPLPIHVTEHARTEVIARRNQAFQQFVGIVSQRFAVLHYRAWAQLKAMIGHEH
DDDKNPFLRHLRQTVGVDTALMVNPHVQRLREAYPGTYLPGRRSLRQLNKMLAAYFAVPITITPRYAKWIDDGKQSGSQK
LGKLGSTRIGSRFFDAQYGAHIQIGPLGAPQYQQYQRGSRRLQALVSICHDFTSHQLMLDVSLLIATEPGMAAQLGGKSL
SKDSWLKPKTGTFRQLVYQSTT*

  Nucleotide sequence: 1029 bp    

>T6CP259543 NZ_PQGJ01000003:461831-462859 [Serratia marcescens] [TssG]
ATGGCTGATATGTCGTTGATGCGTGAAACGGCGCTCTCGTTGGAACAGGCGCCGACGCCGGGGGCGCAAAGCGAAAGCGC
GGGCCAGGCCGAAATCCGCGGGCTGTCCAATCGACAGGATTTTTTCGAGCTGCTGCGGCGTATCGAACGCGCGCAGCCGG
ATGCGCCGCGGCTCGGCGTCTCCAACGATCGCAGCCGCGAAAGGCTCTGCATTACCCAGCCGGCGGATATGGCGTTCGCT
TCGCGTGAAATCACCTCTATCGTGCAGCGCCCTAAGCAAGTGCTGATTCAGGCGCGGCATTTCGGCATGTTCGCCCCCTA
CGGCCCTCTGCCGATCCATGTGACCGAGCACGCGCGCACCGAAGTCATCGCCAGACGCAACCAGGCGTTCCAGCAGTTCG
TCGGCATCGTCAGCCAGCGCTTCGCCGTATTGCACTACCGGGCCTGGGCGCAGCTGAAGGCGATGATCGGCCATGAGCAT
GACGATGACAAAAACCCGTTCTTGCGCCATTTGCGCCAGACGGTGGGCGTCGATACGGCGCTGATGGTGAACCCGCATGT
CCAGCGCCTGCGCGAGGCGTATCCCGGCACTTATCTGCCCGGCCGCCGCTCGCTGCGGCAGCTCAACAAGATGTTGGCGG
CCTACTTCGCCGTTCCCATCACGATTACGCCGCGCTACGCCAAGTGGATCGACGACGGCAAGCAAAGCGGCAGCCAAAAG
TTGGGCAAGTTGGGCAGCACGCGCATCGGCAGCCGCTTTTTCGATGCCCAGTACGGCGCGCATATTCAGATCGGCCCGCT
GGGGGCCCCGCAGTATCAGCAGTATCAGCGCGGCAGCCGGCGGCTGCAGGCGCTGGTGAGCATCTGTCATGACTTCACGA
GCCATCAGCTGATGCTGGACGTCAGCCTGCTGATCGCCACGGAGCCGGGCATGGCGGCGCAGCTGGGCGGCAAGTCGCTG
AGTAAAGACAGCTGGCTGAAACCTAAGACAGGGACGTTTAGGCAGCTGGTTTATCAATCAACAACTTAA