Detailed information of component protein


Summary

Component ID T6CP259539
Component protein type TssC
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (509 a.a.); Nucleotide sequence (1527 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13305
Coordinate (Strand) 457175..458701 (+)
NCBI ID WP_004935371.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A6I4GYS9_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 7.9e-127 76..377
VipB_2 PF18945.2 1.1e-43 388..499
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-508 MRARQRRYSAKQQATAVAEVETQDTENELDGLLKRSFRPRTNEASEAVRRAIGTLSEYANKGKVKVSQDVVLTIESLIAQIDEQLSQQMNNILHHKEFQKLESAWQGLSYLVDNTNVSETLKIRVLNISQDELTRNLRRYRGSAWDQSPVFKQIYEQEYGQFGGEPFGCIIGDFEFDHSPMSVTLLTELAKISAASHCPFISAASPSLLQMSKWNELGNPRDIGKIFTTPEYASWRRLRESNDSRYLVLTMPRFLSRLPYGAKTNPIEEFAFEESVRPDVDDDFSWANSAYAMGVNINRAFHEYGWCSKIRGIESGGSVEELPAYAFPSDEGGYELTCPTEVAISDRREQELSDAGFLPLVYRKHSDFAAFIGSCTMHAPAKYEDPDATANAKLSSRLPYIFATCRFAHYLKCIVRDKIGSFRSRDDMQLWLNDWLMNYVDGDPSVSTEATKARRPLAAAEVRVEDVEDDPGYYRAHFYLRPHYQLEGMTVSLRLVSKLPSAKKDGSR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9450 - -


  Protein sequence: 509 a.a.    

>T6CP259539 NZ_PQGJ01000003:457175-458701 [Serratia marcescens] [TssC]
MRARQRRYSAKQQATAVAEVETQDTENELDGLLKRSFRPRTNEASEAVRRAIGTLSEYANKGKVKVSQDVVLTIESLIAQ
IDEQLSQQMNNILHHKEFQKLESAWQGLSYLVDNTNVSETLKIRVLNISQDELTRNLRRYRGSAWDQSPVFKQIYEQEYG
QFGGEPFGCIIGDFEFDHSPMSVTLLTELAKISAASHCPFISAASPSLLQMSKWNELGNPRDIGKIFTTPEYASWRRLRE
SNDSRYLVLTMPRFLSRLPYGAKTNPIEEFAFEESVRPDVDDDFSWANSAYAMGVNINRAFHEYGWCSKIRGIESGGSVE
ELPAYAFPSDEGGYELTCPTEVAISDRREQELSDAGFLPLVYRKHSDFAAFIGSCTMHAPAKYEDPDATANAKLSSRLPY
IFATCRFAHYLKCIVRDKIGSFRSRDDMQLWLNDWLMNYVDGDPSVSTEATKARRPLAAAEVRVEDVEDDPGYYRAHFYL
RPHYQLEGMTVSLRLVSKLPSAKKDGSR*

  Nucleotide sequence: 1527 bp    

>T6CP259539 NZ_PQGJ01000003:457175-458701 [Serratia marcescens] [TssC]
ATGAGAGCGAGGCAACGACGCTATTCGGCTAAGCAGCAGGCTACGGCAGTCGCTGAAGTTGAAACGCAGGACACGGAAAA
TGAGCTTGACGGTTTGCTCAAGCGTTCATTCCGGCCCAGAACGAACGAGGCTTCGGAAGCGGTTCGTCGGGCTATCGGCA
CGCTGTCCGAATATGCCAACAAAGGCAAGGTCAAGGTCAGCCAGGATGTCGTATTGACCATTGAATCGTTGATTGCCCAG
ATCGACGAACAGCTTTCGCAACAGATGAACAATATCTTGCACCACAAGGAGTTCCAGAAGCTGGAGTCCGCCTGGCAAGG
TCTGAGTTATCTGGTCGATAACACCAACGTCAGCGAAACGCTCAAGATCCGGGTGTTGAACATCAGCCAAGATGAGCTGA
CGCGCAATTTGCGCCGCTATCGGGGCTCCGCCTGGGATCAAAGCCCGGTGTTCAAACAGATTTACGAACAGGAATATGGT
CAGTTCGGCGGCGAGCCGTTCGGTTGCATCATCGGCGATTTTGAATTCGATCACAGCCCGATGAGCGTCACGCTGCTGAC
CGAGTTGGCGAAAATTTCCGCGGCGTCGCACTGTCCGTTCATTTCCGCCGCGTCGCCGTCGCTGCTGCAGATGAGCAAGT
GGAACGAACTGGGCAACCCGCGGGATATCGGCAAGATTTTCACCACGCCGGAATATGCGTCCTGGCGCCGCCTGCGCGAA
AGCAACGACTCGCGTTACCTGGTGTTGACGATGCCGCGTTTCCTGTCGCGTTTGCCTTACGGGGCGAAAACCAACCCGAT
CGAAGAGTTCGCTTTCGAGGAGTCCGTCAGGCCGGATGTGGATGATGATTTTTCCTGGGCCAACTCGGCGTATGCGATGG
GCGTCAACATCAACCGCGCGTTCCATGAGTACGGCTGGTGTTCGAAGATTCGCGGCATCGAATCCGGCGGCTCGGTGGAA
GAACTGCCCGCCTACGCGTTTCCTTCCGATGAGGGCGGATATGAACTGACGTGCCCGACGGAAGTGGCCATTTCCGATCG
GCGCGAGCAAGAGCTTTCCGACGCCGGGTTCTTGCCTCTGGTCTATCGCAAGCATTCCGATTTCGCCGCTTTTATCGGTT
CTTGCACCATGCACGCGCCGGCGAAATACGAGGATCCCGACGCGACGGCCAACGCCAAGCTGTCTTCGCGCTTGCCTTAT
ATTTTCGCTACGTGCCGATTCGCGCACTATTTGAAATGCATCGTGCGCGACAAAATCGGTTCTTTCCGGTCCAGGGACGA
TATGCAGCTGTGGCTGAATGACTGGCTGATGAACTACGTCGATGGCGATCCTTCCGTATCGACCGAGGCGACCAAGGCGC
GTCGTCCATTAGCCGCCGCCGAGGTGCGCGTTGAGGATGTGGAAGATGATCCGGGTTATTACCGCGCGCATTTCTATTTG
CGCCCGCATTACCAGTTGGAAGGCATGACCGTGTCCTTGCGACTTGTATCAAAACTTCCGTCAGCCAAAAAAGATGGGAG
CAGATAA