Detailed information of component protein


Summary

Component ID T6CP259537
Component protein type TssA
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (322 a.a.); Nucleotide sequence (966 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13295
Coordinate (Strand) 455631..456596 (+)
NCBI ID WP_004935378.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A0P0QGC3_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.4e-11 12..122
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-321 MNEVISTEVNGVEFDPRYSEIEFTLSEYDSQTDPLNAVDNARDINWHAIREQSAALLEQCFDLHVVLWFMRANLHIDGFSAFYQGIKDIDAKYAEEGATIFPQADMEPSSDSFHAAALGWLATSSCLHEIKNSKIFPDTPLTTDELLNMRLDEQEGKSLHFSEVVKVLGQADSYFAGRNLPSLKEQLALEIDALERVENYANLQAEDYRLDCRQVRDYLKQFSRQLASLEQQELPAERDDAEIDSPDADAPVAMPGKYIRSRQDVILLLDQVLDYFQNYEPSHPAPILIRRSQKMIGMDFATIVEELLPESLASLNQLSGK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9912 - -


  Protein sequence: 322 a.a.    

>T6CP259537 NZ_PQGJ01000003:455631-456596 [Serratia marcescens] [TssA]
MNEVISTEVNGVEFDPRYSEIEFTLSEYDSQTDPLNAVDNARDINWHAIREQSAALLEQCFDLHVVLWFMRANLHIDGFS
AFYQGIKDIDAKYAEEGATIFPQADMEPSSDSFHAAALGWLATSSCLHEIKNSKIFPDTPLTTDELLNMRLDEQEGKSLH
FSEVVKVLGQADSYFAGRNLPSLKEQLALEIDALERVENYANLQAEDYRLDCRQVRDYLKQFSRQLASLEQQELPAERDD
AEIDSPDADAPVAMPGKYIRSRQDVILLLDQVLDYFQNYEPSHPAPILIRRSQKMIGMDFATIVEELLPESLASLNQLSG
K*

  Nucleotide sequence: 966 bp    

>T6CP259537 NZ_PQGJ01000003:455631-456596 [Serratia marcescens] [TssA]
ATGAATGAAGTCATCTCAACGGAAGTGAATGGCGTCGAATTTGATCCACGATACAGTGAAATTGAATTCACGCTTTCGGA
ATATGACAGCCAAACCGATCCGCTTAATGCCGTAGACAATGCGCGTGATATCAATTGGCACGCCATTCGCGAGCAGTCTG
CCGCGTTGCTGGAACAGTGCTTCGATTTACATGTCGTGCTGTGGTTTATGCGCGCCAATCTTCATATCGACGGTTTTTCG
GCCTTCTACCAGGGCATTAAGGATATTGACGCCAAATATGCCGAGGAGGGCGCCACCATTTTCCCTCAGGCGGACATGGA
ACCCTCATCGGACAGCTTTCATGCGGCCGCATTAGGGTGGCTCGCCACATCGTCCTGTCTGCACGAAATCAAGAACAGCA
AGATTTTTCCAGACACGCCGTTAACCACCGACGAGCTGCTGAATATGCGGCTTGACGAGCAGGAAGGCAAAAGCCTGCAT
TTTTCGGAGGTGGTAAAGGTGCTGGGGCAAGCCGACAGTTATTTTGCCGGCAGAAATCTGCCTTCGCTGAAAGAGCAATT
GGCGCTGGAAATCGATGCGCTGGAGCGCGTCGAGAATTACGCCAATCTGCAGGCTGAAGATTATCGTTTGGACTGTCGGC
AGGTGCGCGACTATTTGAAACAGTTCAGCCGCCAGCTGGCTTCACTGGAACAGCAGGAATTGCCGGCTGAACGGGATGAC
GCGGAGATTGACTCGCCGGATGCTGACGCGCCTGTCGCCATGCCCGGCAAATATATCCGTTCCCGGCAGGATGTCATCTT
GCTGTTGGATCAGGTTTTGGACTATTTCCAAAACTATGAGCCCAGCCATCCGGCCCCCATTCTTATTCGACGTTCACAAA
AAATGATCGGTATGGACTTCGCGACGATTGTTGAGGAGCTTTTGCCGGAATCTCTGGCCTCGTTAAATCAATTGTCCGGG
AAGTAA