Detailed information of component protein


Summary

Component ID T6CP259540
Component protein type TssD
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (175 a.a.); Nucleotide sequence (525 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13310
Coordinate (Strand) 458933..459457 (+)
NCBI ID WP_004935369.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A5C7DDD9_9GAMM, A0A7C8CI70_9ENTR, A0A7X2USK1_9GAMM, A0A1B3FE12_9GAMM, A0A0A5TBI5_SERMA
KEGG ID ssur:ATE40_012360
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 2.7e-38 10..149
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-174 MSTKALVDYFLKIEGVDGESPDQTYPGWIQLQAWQWAEENAGRWGFGSGGGSGKVEMKDFEFRMVSNKASPKLFLMCATGEHIPQAKLVCRKSGQGQQDFIAVTFSNCLVSSFKTVGNMPLNSTIGTEIDTVLPTDVIKLNFARIEVEYKEQNNDGSMGAVIKTGYDLKLNARI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9864 - -


  Protein sequence: 175 a.a.    

>T6CP259540 NZ_PQGJ01000003:458933-459457 [Serratia marcescens] [TssD]
MSTKALVDYFLKIEGVDGESPDQTYPGWIQLQAWQWAEENAGRWGFGSGGGSGKVEMKDFEFRMVSNKASPKLFLMCATG
EHIPQAKLVCRKSGQGQQDFIAVTFSNCLVSSFKTVGNMPLNSTIGTEIDTVLPTDVIKLNFARIEVEYKEQNNDGSMGA
VIKTGYDLKLNARI*

  Nucleotide sequence: 525 bp    

>T6CP259540 NZ_PQGJ01000003:458933-459457 [Serratia marcescens] [TssD]
ATGAGCACGAAAGCTTTAGTAGACTATTTTTTGAAAATTGAGGGTGTTGATGGTGAATCACCCGACCAAACCTACCCTGG
CTGGATTCAGCTGCAAGCCTGGCAATGGGCGGAAGAAAACGCCGGCCGTTGGGGGTTCGGGAGCGGCGGCGGTTCAGGCA
AAGTCGAGATGAAAGACTTTGAGTTTCGCATGGTGAGCAATAAGGCTTCGCCGAAACTGTTCCTGATGTGCGCCACCGGC
GAGCATATTCCTCAGGCAAAACTTGTTTGCCGTAAATCAGGCCAGGGTCAGCAAGACTTCATTGCCGTGACCTTCAGCAA
CTGCCTGGTTTCCTCATTCAAGACCGTGGGTAATATGCCGCTGAATTCCACCATCGGTACTGAAATCGATACCGTGCTGC
CAACCGACGTTATCAAGCTGAATTTCGCACGTATCGAAGTTGAGTACAAAGAGCAAAACAATGATGGCTCCATGGGTGCG
GTAATTAAGACGGGGTATGACCTCAAGCTTAATGCCCGTATCTGA