Detailed information of component protein


Summary

Component ID T6CP259546
Component protein type TagB
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (387 a.a.); Nucleotide sequence (1161 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13345
Coordinate (Strand) 470009..471169 (+)
NCBI ID WP_103687265.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000CDA1E0C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pentapeptide_4 PF13599.8 5.1e-12 242..322
Pentapeptide_4 PF13599.8 1.2e-09 42..110
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-386 MRMKTESRVIQQALPDREAIELEVAQAVAQTPPMPRIFKKRRFHDRELKGLTLSDCFFIDCHFERVTFEGCDLRAVRFEGCTLQQVNVVGGSLMSLSFNECRFDNLTLQQGLLCNLACNDTALQGCYVGDCLLDDCGLIRCEVNGAEIERSSLGHLAVQSSTLTNLMFHQDVIQDANWYACQLRQCLWQASTLDRQVMGSCQLETCSWQTIAGQARIWFTCRLSGCTLAQLQLQGASFHRSELEACSFADSDLTSAIFAEAQVQRCDFERATLTLAQGQKARFSECSMGGVNWGHAILPQAEFRACDLALANLEQAELREANLIEQPLTAAQQQSARLHGAQRHRAENVPLTADPFLSAIDAWYAHQQPGPRQPSYQRPTGVSRYV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9845 - -


  Protein sequence: 387 a.a.    

>T6CP259546 NZ_PQGJ01000003:470009-471169 [Serratia marcescens] [TagB]
MRMKTESRVIQQALPDREAIELEVAQAVAQTPPMPRIFKKRRFHDRELKGLTLSDCFFIDCHFERVTFEGCDLRAVRFEG
CTLQQVNVVGGSLMSLSFNECRFDNLTLQQGLLCNLACNDTALQGCYVGDCLLDDCGLIRCEVNGAEIERSSLGHLAVQS
STLTNLMFHQDVIQDANWYACQLRQCLWQASTLDRQVMGSCQLETCSWQTIAGQARIWFTCRLSGCTLAQLQLQGASFHR
SELEACSFADSDLTSAIFAEAQVQRCDFERATLTLAQGQKARFSECSMGGVNWGHAILPQAEFRACDLALANLEQAELRE
ANLIEQPLTAAQQQSARLHGAQRHRAENVPLTADPFLSAIDAWYAHQQPGPRQPSYQRPTGVSRYV*

  Nucleotide sequence: 1161 bp    

>T6CP259546 NZ_PQGJ01000003:470009-471169 [Serratia marcescens] [TagB]
ATGCGCATGAAAACTGAAAGCCGCGTGATTCAACAGGCGCTGCCTGACCGAGAGGCGATCGAACTGGAGGTCGCCCAGGC
GGTGGCGCAGACGCCGCCCATGCCGCGGATCTTCAAGAAACGCCGGTTTCACGATCGCGAGCTGAAAGGGTTGACGCTGA
GCGACTGCTTTTTCATCGACTGTCATTTCGAACGCGTCACGTTTGAAGGTTGTGATTTGCGGGCGGTGCGCTTTGAGGGC
TGCACCCTGCAGCAGGTCAACGTGGTCGGCGGCAGCCTGATGAGCCTGTCGTTCAACGAATGCCGGTTTGACAACCTGAC
GCTGCAACAGGGGCTGCTGTGCAATTTGGCGTGCAACGACACCGCGCTGCAGGGGTGTTACGTCGGCGATTGTCTGCTGG
ATGACTGCGGTTTGATCCGGTGCGAGGTCAACGGCGCGGAAATTGAACGCAGCAGCCTGGGGCATCTGGCGGTGCAGTCC
AGCACCCTGACTAACCTGATGTTTCACCAGGACGTGATACAGGACGCCAACTGGTACGCCTGCCAGCTCAGGCAGTGCCT
GTGGCAGGCGTCGACCCTGGATCGTCAGGTGATGGGCAGTTGTCAGCTGGAGACGTGCAGCTGGCAGACGATCGCGGGGC
AGGCGCGCATCTGGTTCACCTGCCGCCTGTCGGGCTGCACTTTGGCGCAGCTACAGCTGCAGGGCGCCAGCTTTCATCGC
AGCGAGCTGGAGGCGTGTTCGTTCGCCGACAGCGATCTGACCTCGGCGATCTTCGCCGAAGCGCAGGTACAGCGCTGCGA
TTTCGAACGCGCGACGCTGACCCTGGCGCAGGGGCAGAAGGCCCGGTTCAGCGAATGCTCGATGGGCGGCGTCAACTGGG
GGCACGCCATCTTGCCGCAAGCGGAATTCAGGGCGTGCGATCTGGCGTTAGCCAATCTTGAGCAGGCCGAACTGCGGGAA
GCGAACCTGATCGAACAGCCGTTGACCGCCGCTCAGCAACAGAGCGCTCGCCTGCATGGCGCGCAGCGTCATCGCGCCGA
AAATGTGCCGCTTACCGCCGATCCGTTCTTGAGTGCGATCGACGCCTGGTATGCGCATCAACAACCGGGGCCGCGGCAAC
CGTCGTATCAACGGCCAACAGGAGTAAGCAGATATGTATAA