Detailed information of component protein


Summary

Component ID T6CP259552
Component protein type TssM
T6SS ID (Type) T6SS17504 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (1160 a.a.); Nucleotide sequence (3480 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) C3R39_RS13375
Coordinate (Strand) 475568..479047 (+)
NCBI ID WP_103687203.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000CDA81F8
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 1e-60 515..793
IcmF-related_N PF14331.8 8.9e-30 197..367
IcmF_C PF06744.14 1.7e-23 1035..1131

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-4 MIRR
Transmembrane helix 5-27 SFILVIALLLCAVVWWIGPLIAI
Outside 28-41 GTYRPLLSVWVRGI
Transmembrane helix 42-64 IIALILCWALWPFVATFLSWVFR
Inside 65-430 HARAPVPAKRKTAQRDRVTSRFYDALRTLQYVGTAKQRTPWQRFKYRLTRRYVSEKPWFLVIGPPGSGKTSLIGESGERFLLAEHYGLQQTVDVGPTQDCNWWLAENSVYVDTSGEWLQLNGLGEEGARARDTLFKLIRRHRRHPGIDGIMLCLDARWLLHASLTERKSVADALRVRLLEMASWFRSELPVYLTISHLDQLVGGETFLSMLGDDLLQKGMGFSLNRAEQGETPFEQYETLYREMVARVSHHVLELLHDAPDGQNRQQLLFFTESLGSLGNPLYSLLEQIFPQTPVGYACHLQQVWLGSTIALPPQGAIYNAEAADIYEARPTGRIYHPELDYARQERGVMQQSSHARPLGSRMSSL
Transmembrane helix 431-453 GRYVLVLILLAVSFNLLAMRYLW
Outside 454-1159 ESDYISYIAARFDETKRIVREIPVTNRVSDDVISAYEQLGYMNAQLGGEVSPVPNPYFEHKLINSAAQKTYQRHLLQIFWPAVENYIADELKNDVSASNKDVYGTLKVYLMMGEPSHRSAEALVDWFMARWETFMPQGYTDMNKGIFAYHLREMFSLPDAPVMKMNGDLLRLARVKAMNIPMQVRVVRRIEEKPLPAAINDISLADAAGPNVSLMLRRKSQATVTDTAVPGFYTRASYRDVFLAQLDDAAKDMIEEESWVLRDSGEGKNAVNSLASAQKLADEARKLYLIEYADKWDAFMRDVRARPVNGLEDAAILARQLSDPSSPLANLVRFAARETSMTGTNQGDAASWFDRQRNRIEQQRRDILGEISGERARFRLTPERAVEDRFELLRRLGYQLLQTTNASNDPLSRSFEALYSQLTTLSTSLRGGQVVPAGGTLKRLQLDAARQPEPVRSVMMDLLQVGDSQTIQQSQKNLSKGASSLASGLCKSSISGRYPFSRNARAEVGIEDFSRMFGQSGAMQQFFDENLAPYVDVNAQKWNAKPGSEGIVNASTLGAFENARLIRDTFFTAGDKLSFSMFIRPLSLTPTITEATLDIDGQVINYSHGFSQPTRIDWPGPKGGSYVRLTFRTGTGQIQVASFDGPWALFRMFDASNPVPLASDRRELTMSMSSVVGVLKLELRSTMKDFPLWSRALRGFSCPKAM



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9596 - -



  Protein sequence: 1160 a.a.    

>T6CP259552 NZ_PQGJ01000003:475568-479047 [Serratia marcescens] [TssM]
MIRRSFILVIALLLCAVVWWIGPLIAIGTYRPLLSVWVRGIIIALILCWALWPFVATFLSWVFRHARAPVPAKRKTAQRD
RVTSRFYDALRTLQYVGTAKQRTPWQRFKYRLTRRYVSEKPWFLVIGPPGSGKTSLIGESGERFLLAEHYGLQQTVDVGP
TQDCNWWLAENSVYVDTSGEWLQLNGLGEEGARARDTLFKLIRRHRRHPGIDGIMLCLDARWLLHASLTERKSVADALRV
RLLEMASWFRSELPVYLTISHLDQLVGGETFLSMLGDDLLQKGMGFSLNRAEQGETPFEQYETLYREMVARVSHHVLELL
HDAPDGQNRQQLLFFTESLGSLGNPLYSLLEQIFPQTPVGYACHLQQVWLGSTIALPPQGAIYNAEAADIYEARPTGRIY
HPELDYARQERGVMQQSSHARPLGSRMSSLGRYVLVLILLAVSFNLLAMRYLWESDYISYIAARFDETKRIVREIPVTNR
VSDDVISAYEQLGYMNAQLGGEVSPVPNPYFEHKLINSAAQKTYQRHLLQIFWPAVENYIADELKNDVSASNKDVYGTLK
VYLMMGEPSHRSAEALVDWFMARWETFMPQGYTDMNKGIFAYHLREMFSLPDAPVMKMNGDLLRLARVKAMNIPMQVRVV
RRIEEKPLPAAINDISLADAAGPNVSLMLRRKSQATVTDTAVPGFYTRASYRDVFLAQLDDAAKDMIEEESWVLRDSGEG
KNAVNSLASAQKLADEARKLYLIEYADKWDAFMRDVRARPVNGLEDAAILARQLSDPSSPLANLVRFAARETSMTGTNQG
DAASWFDRQRNRIEQQRRDILGEISGERARFRLTPERAVEDRFELLRRLGYQLLQTTNASNDPLSRSFEALYSQLTTLST
SLRGGQVVPAGGTLKRLQLDAARQPEPVRSVMMDLLQVGDSQTIQQSQKNLSKGASSLASGLCKSSISGRYPFSRNARAE
VGIEDFSRMFGQSGAMQQFFDENLAPYVDVNAQKWNAKPGSEGIVNASTLGAFENARLIRDTFFTAGDKLSFSMFIRPLS
LTPTITEATLDIDGQVINYSHGFSQPTRIDWPGPKGGSYVRLTFRTGTGQIQVASFDGPWALFRMFDASNPVPLASDRRE
LTMSMSSVVGVLKLELRSTMKDFPLWSRALRGFSCPKAM*

  Nucleotide sequence: 3480 bp    

>T6CP259552 NZ_PQGJ01000003:475568-479047 [Serratia marcescens] [TssM]
ATGATACGTAGATCATTCATATTGGTGATTGCCTTGCTGCTGTGTGCGGTGGTGTGGTGGATTGGGCCGTTGATCGCCAT
CGGCACCTATCGGCCGCTGCTGTCGGTCTGGGTCAGGGGCATCATCATCGCGCTGATTCTGTGCTGGGCGCTGTGGCCGT
TCGTGGCGACGTTCTTATCCTGGGTGTTCCGTCATGCGCGAGCGCCGGTTCCGGCCAAACGCAAGACCGCCCAGCGAGAT
CGCGTGACCTCGCGCTTTTACGACGCCTTGCGCACCTTGCAGTACGTCGGCACGGCGAAGCAGCGCACCCCCTGGCAGCG
TTTCAAATACCGCCTGACGCGCCGTTACGTCAGCGAAAAGCCGTGGTTTCTGGTCATCGGGCCGCCGGGCAGCGGCAAAA
CCTCGCTGATCGGCGAAAGCGGCGAACGCTTCTTGCTGGCCGAGCACTATGGCCTGCAGCAGACGGTGGACGTCGGGCCG
ACCCAGGATTGCAACTGGTGGCTGGCGGAGAATTCGGTGTATGTCGACACCTCCGGCGAATGGCTGCAGTTGAACGGTCT
GGGGGAAGAGGGCGCCAGGGCGCGCGACACCCTGTTCAAGCTGATCCGCCGCCATCGCCGCCATCCGGGCATCGACGGCA
TCATGCTGTGTCTGGATGCGCGTTGGTTGCTGCACGCCTCGCTGACGGAGAGAAAGTCGGTCGCCGACGCACTGCGCGTG
CGCCTGCTGGAGATGGCCTCGTGGTTCCGCAGCGAGCTGCCGGTCTATCTTACCATCAGCCACCTCGATCAACTGGTCGG
CGGCGAGACCTTCCTGTCGATGCTGGGCGACGATCTGTTGCAAAAAGGCATGGGGTTCAGCCTGAACCGCGCCGAACAGG
GAGAAACCCCCTTCGAGCAGTATGAAACCCTCTACCGGGAGATGGTGGCGCGCGTCAGCCATCACGTGCTCGAACTGTTG
CACGATGCGCCGGACGGCCAAAACCGCCAGCAGCTGCTGTTCTTCACCGAGTCGCTGGGGTCGCTGGGCAACCCGCTGTA
TTCCCTGTTAGAGCAGATCTTCCCGCAAACGCCGGTGGGCTACGCCTGCCATCTGCAGCAGGTGTGGCTGGGCAGCACCA
TCGCCTTGCCGCCGCAGGGGGCGATCTACAACGCGGAAGCGGCGGATATCTATGAAGCTCGCCCGACCGGGCGCATTTAT
CACCCGGAGCTGGATTACGCCCGGCAAGAACGCGGGGTGATGCAGCAGTCTTCGCACGCCAGGCCGCTCGGCAGCCGCAT
GAGCTCTCTGGGCCGCTATGTGCTGGTGCTCATTCTGTTGGCGGTCTCGTTTAACCTGCTGGCGATGCGTTACCTGTGGG
AGAGCGATTACATCTCCTACATTGCGGCACGCTTTGACGAAACGAAGCGCATCGTGCGCGAAATACCGGTGACTAACCGC
GTCAGCGACGATGTCATTTCCGCCTATGAGCAGCTGGGCTACATGAACGCGCAATTGGGCGGCGAAGTGTCGCCGGTGCC
GAATCCCTATTTCGAGCACAAGCTGATCAACAGCGCGGCGCAAAAAACCTACCAACGCCATTTGCTGCAGATCTTCTGGC
CGGCGGTGGAAAACTATATCGCGGACGAACTCAAGAATGACGTCTCGGCGTCCAACAAGGACGTCTACGGCACTTTGAAA
GTGTACCTGATGATGGGCGAACCTTCGCATCGCTCCGCCGAAGCCTTGGTCGACTGGTTCATGGCGCGCTGGGAAACCTT
TATGCCGCAGGGTTACACCGACATGAACAAAGGCATCTTCGCTTACCATCTGCGGGAGATGTTCTCTTTGCCGGACGCGC
CGGTCATGAAGATGAACGGCGATCTGCTGCGCCTGGCGCGGGTGAAAGCGATGAACATTCCGATGCAGGTGCGGGTGGTG
CGCCGCATCGAAGAGAAACCGTTGCCGGCGGCGATCAACGATATTTCGTTGGCCGACGCCGCCGGACCGAACGTCTCCTT
GATGCTGCGCCGCAAGAGCCAGGCGACGGTCACCGATACCGCCGTGCCGGGGTTCTATACCCGCGCCAGCTATCGCGACG
TTTTCCTGGCGCAGCTCGATGACGCCGCCAAGGACATGATCGAAGAAGAGTCCTGGGTGCTGCGCGACAGTGGGGAAGGG
AAAAACGCGGTGAACTCGCTGGCCTCGGCGCAGAAGCTGGCCGACGAGGCGAGGAAGCTTTATCTCATCGAGTATGCCGA
CAAATGGGATGCGTTCATGCGCGATGTACGCGCCCGGCCGGTCAACGGGCTTGAGGATGCGGCGATCCTGGCGCGTCAAC
TGTCCGACCCTTCTTCCCCGCTGGCCAATCTGGTGCGCTTCGCCGCGCGCGAAACCAGCATGACCGGCACCAACCAGGGC
GATGCGGCAAGCTGGTTCGACCGCCAGCGCAACCGCATCGAGCAGCAGCGGCGCGACATCCTGGGCGAGATTTCCGGCGA
GCGCGCGCGTTTTCGTCTCACGCCGGAGCGCGCGGTGGAAGATCGCTTCGAGCTGCTGCGCCGTCTGGGCTATCAGCTGT
TGCAGACCACCAACGCCAGCAACGATCCGCTGAGCCGCAGTTTCGAAGCGCTGTACAGCCAGTTGACCACCTTGTCCACC
TCGCTGCGCGGCGGCCAGGTGGTGCCCGCCGGAGGCACGCTGAAGCGCCTGCAGCTGGATGCGGCGCGCCAGCCGGAACC
GGTGCGCAGCGTGATGATGGATCTGTTGCAGGTCGGGGACAGCCAGACGATTCAGCAAAGCCAGAAGAACCTGAGCAAAG
GCGCTTCGTCGCTGGCCTCCGGCTTGTGCAAGAGCAGCATCAGCGGGCGTTATCCGTTCTCGCGCAACGCCAGAGCGGAG
GTCGGCATCGAGGACTTCTCGCGCATGTTTGGCCAAAGCGGCGCGATGCAGCAGTTCTTCGATGAGAACCTGGCCCCTTA
TGTGGACGTCAACGCGCAGAAATGGAATGCCAAACCGGGTTCAGAGGGGATCGTCAATGCCAGCACGCTGGGCGCGTTTG
AAAATGCCCGGCTGATCCGCGATACCTTCTTCACCGCCGGCGACAAGCTGTCCTTCTCCATGTTCATCAGGCCGTTGTCC
CTGACGCCGACCATTACGGAAGCGACCCTGGATATCGACGGGCAGGTGATTAACTACAGCCATGGTTTCAGCCAGCCTAC
CCGTATCGATTGGCCGGGCCCGAAAGGCGGCAGCTATGTTCGACTCACCTTCCGCACCGGCACCGGCCAGATCCAGGTCG
CCAGTTTTGACGGACCCTGGGCCTTGTTCCGGATGTTCGACGCCAGCAATCCCGTGCCGCTCGCCAGCGACAGGCGAGAG
CTGACGATGTCGATGTCGTCGGTGGTGGGCGTGCTCAAACTGGAATTGCGCTCGACGATGAAAGATTTCCCACTTTGGTC
ACGGGCGTTGCGAGGATTCTCGTGCCCGAAAGCGATGTAA