Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01241  |
| T6SS type | Type i5 |
| Strain | Agrobacterium tumefaciens strain 12D1 |
| Replicon (RefSeq) | chromosome (NZ_CP033032) |
| Location | 1717106..1741674 |
| Function | anti-bacterial |
| Comment | T6SS exhibits antibacterial and secrete hcp activity |
| References | [1] Wu CF, Santos MNM, Cho ST, Chang HH, Tsai YM, Smith DA, Kuo CH, Chang JH, Lai EM. et al (2019) Plant-Pathogenic Agrobacterium tumefaciens Strains Have Diverse Type VI Effector-Immunity Pairs and Vary in In-Planta Competitiveness.. Mol Plant Microbe Interact. 32(8):961-971. [PudMed:30830835] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | Tae4 | TagF | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF01855 |
At12D1_RS23110 (E4) | Tde | IMU00379 |
Agrobacterium tumefaciens strain 12D1 | chromosome (NZ_CP033032) | 1742752..1743675 (+) | 489600126 |
| EFF01854 |
At12D1_RS23080 (Hcp) | - | - | Agrobacterium tumefaciens strain 12D1 | chromosome (NZ_CP033032) | 1737810..1738286 (+) | 489600119 |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| IMU00379 |
At12D1_RS23115 (I4) | EFF01855 |
Agrobacterium tumefaciens strain 12D1 | chromosome (NZ_CP033032) | 1743686..1744216 (+) | 489600127 |
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|