Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01282  |
| T6SS type | Type i3 |
| Strain | Kosakonia oryzae strain KO348 |
| Replicon (RefSeq) | chromosome (NZ_JZLI01000006) |
| Location | 149587..193032 |
| Function | anti-bacterial; anti-adverse environment |
| Comment | There is a significant role for T6SS in the rhizoplane colonization and to a much lesser extent in the root endosphere colonization by Kosakonia sp.KO348. And K0348 can secret VgrGs. |
| References | [1] Mosquito S, Bertani I, Licastro D, Compant S, Myers MP, Hinarejos E, Levy A, Venturi V. et al (2020) In Planta Colonization and Role of T6SS in Two Rice Kosakonia Endophytes.. Mol Plant Microbe Interact. 33(2):349-363. [PudMed:31609645] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TagF | TagH | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| UG97_RS08995 | 148656..149084 | - | 429 | 780193596 | DcrB-related protein | ||
| UG97_RS09000 | 149088..149576 | - | 489 | 780193600 | hypothetical protein | ||
| T6CP015924 | TssI | UG97_RS09005 (tssI) | 149587..152196 | - | 2610 | 780193605 | type VI secretion system tip protein VgrG |
| UG97_RS09010 | 152297..152689 | - | 393 | 512737880 | DUF4150 domain-containing protein | ||
| UG97_RS09015 | 152694..153299 | - | 606 | 780193609 | DUF3540 domain-containing protein | ||
| UG97_RS09020 | 153296..154381 | - | 1086 | 780193614 | pentapeptide repeat-containing protein | ||
| UG97_RS09025 | 154378..156918 | - | 2541 | 780193618 | DUF2169 domain-containing protein | ||
| UG97_RS09030 | 157004..157366 | - | 363 | 780193621 | hypothetical protein | ||
| UG97_RS09035 | 157366..157762 | - | 397 | pseudogene | hypothetical protein | ||
| UG97_RS09040 | 158109..158417 | - | 309 | 780193630 | hypothetical protein | ||
| UG97_RS09045 | 158550..158909 | - | 360 | 780193633 | hypothetical protein | ||
| UG97_RS09050 | 159059..159439 | - | 381 | 780193862 | hypothetical protein | ||
| UG97_RS09055 | 159517..159891 | - | 375 | 780193638 | hypothetical protein | ||
| UG97_RS09060 | 160005..160376 | - | 372 | 780193643 | hypothetical protein | ||
| UG97_RS09065 | 160614..160919 | - | 306 | 780193646 | hypothetical protein | ||
| UG97_RS09070 | 161012..161380 | - | 369 | 1724533536 | hypothetical protein | ||
| UG97_RS09075 | 161488..161835 | - | 348 | 780193655 | DUF3592 domain-containing protein | ||
| UG97_RS09080 | 162005..162352 | - | 348 | 1175529134 | hypothetical protein | ||
| UG97_RS09085 | 162517..162894 | - | 378 | 780193660 | hypothetical protein | ||
| T6CP015925 | TssI | UG97_RS09090 (tssI) | 162910..165141 | - | 2232 | 780193664 | type VI secretion system tip protein VgrG |
| UG97_RS09095 | 165202..165579 | - | 378 | 512737867 | DcrB-related protein | ||
| UG97_RS09100 | 165722..167194 | - | 1473 | 780193669 | serine/threonine protein kinase | ||
| T6CP015926 | TssH | UG97_RS09105 (tssH) | 167221..169839 | - | 2619 | 780193871 | type VI secretion system ATPase TssH |
| T6CP015927 | TssG | UG97_RS09110 (tssG) | 169953..170996 | - | 1044 | 780193673 | type VI secretion system baseplate subunit TssG |
| T6CP015928 | TssF | UG97_RS09115 (tssF) | 170993..172864 | - | 1872 | 780193678 | type VI secretion system baseplate subunit TssF |
| T6CP015929 | TssE | UG97_RS09120 (tssE) | 172867..173436 | - | 570 | 780193682 | type VI secretion system baseplate subunit TssE |
| UG97_RS09125 | 173429..174241 | - | 813 | 512737861 | hypothetical protein | ||
| UG97_RS09130 | 174251..175240 | - | 990 | 780193687 | hypothetical protein | ||
| UG97_RS09135 | 175261..176055 | - | 795 | 512737859 | serine/threonine-protein phosphatase | ||
| T6CP015930 | TagH | UG97_RS09140 (tagH) | 176052..177857 | - | 1806 | 780193691 | type VI secretion system-associated FHA domain protein TagH |
| UG97_RS23835 | 177987..178823 | - | 837 | 512737857 | DUF1311 domain-containing protein | ||
| UG97_RS09150 | 178922..179716 | - | 795 | 780193694 | DUF1311 domain-containing protein | ||
| UG97_RS09155 | 179720..180553 | - | 834 | 780193699 | peptidoglycan-binding protein | ||
| T6CP015931 | TssD | UG97_RS09160 | 180757..181239 | - | 483 | 512737854 | type VI secretion system tube protein Hcp |
| UG97_RS09165 | 181437..181931 | - | 495 | 780193703 | hypothetical protein | ||
| UG97_RS25460 | 181928..182359 | - | 432 | 780193707 | hypothetical protein | ||
| T6CP015932 | TssC | UG97_RS09175 (tssC) | 182428..183930 | - | 1503 | 512737852 | type VI secretion system contractile sheath large subunit |
| T6CP015933 | TssB | UG97_RS09180 (tssB) | 183934..184458 | - | 525 | 512737851 | type VI secretion system contractile sheath small subunit |
| T6CP015934 | TssA | UG97_RS09185 (tssA) | 184533..185546 | - | 1014 | 780193711 | type VI secretion system protein TssA |
| T6CP015935 | TagF | UG97_RS09190 (tagF) | 185558..186268 | - | 711 | 512737849 | type VI secretion system-associated protein TagF |
| T6CP015936 | TssM | UG97_RS09195 (tssM) | 186287..189898 | - | 3612 | 780193716 | type VI secretion system membrane subunit TssM |
| T6CP015937 | TssL | UG97_RS09200 | 189902..191140 | - | 1239 | 512737847 | DotU family type VI secretion system protein |
| T6CP015938 | TssK | UG97_RS09205 (tssK) | 191158..192501 | - | 1344 | 512737846 | type VI secretion system baseplate subunit TssK |
| T6CP015939 | TssJ | UG97_RS09210 (tssJ) | 192526..193032 | - | 507 | 780193720 | type VI secretion system lipoprotein TssJ |
| UG97_RS09215 | 193056..193547 | - | 492 | 512737844 | hypothetical protein | ||
| UG97_RS09220 | 194530..196251 | + | 1722 | 780193725 | alpha,alpha-trehalase | ||
| UG97_RS09225 | 196321..196575 | - | 255 | 780193730 | GlsB/YeaQ/YmgE family stress response membrane protein | ||
| UG97_RS09230 | 196786..197517 | + | 732 | 512737841 | flagellar brake protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF01839 |
UG97_RS03505 | - | - | Kosakonia oryzae strain KO348 | chromosome (NZ_JZLI01000002) | 281642..283567 (+) | 521291363 |
| EFF01840 |
UG97_RS09005 | - | - | Kosakonia oryzae strain KO348 | chromosome (NZ_JZLI01000006) | 149587..152196 (-) | 780193605 |
| EFF01841 |
UG97_RS00630 | - | - | Kosakonia oryzae strain KO348 | chromosome (NZ_JZLI01000001) | 121734..123386 (-) | 780188092 |
| EFF01842 |
UG97_RS09090 | - | - | Kosakonia oryzae strain KO348 | chromosome (NZ_JZLI01000006) | 162910..165141 (-) | 780193664 |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|