Detailed information of component protein


Summary

Component ID T6CP015924
Component protein type TssI
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (870 a.a.); Nucleotide sequence (2610 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09005
Coordinate (Strand) 149587..152196 (-)
NCBI ID 780193605
RefSeq NZ_JZLI01000006
Uniprot ID UPI0005F098C1
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 8.8e-84 22..326
Phage_base_V PF04717.14 1.3e-14 381..448
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-869 MANRITATLPVGDLLFWKLSGREALSESFTLALTVLGTDARADRSKLLGQSATINIPTQGTGTRYINGKITRVAVSAVELSGTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTAPQIVKTLLGEYQVNVEDKLTGSYRTWDYCVQYQESSLDFISRLMELEGIAYHFRHEADRHVLVLTDAATEHQPFSGYETIPYHQTPSGGSTDEEGISQWALEDSVTPGIYSLDDYDFRKPNAWLFQARQNPASPQPGSIDVYDWPGRFVEHGHGEYYARIRQERWQVEHQQIQGTATAVGVAPGNTFALYNAPFFSDNGEYLTTEANYFFEENRYASGSDGETVHRIDFTVIPSSVVFRPAAVTAWPKTYGPQTAKVVGPQGESIWTDKYGRVKVKFHWDRLAKGDDTSSCWVRVSSAWAGQGFGGVQIPRVGDEVVIDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFLSRSKDGSVDNANALRFEDKAGEEQVWIQAERNMDVHVKNDASRSIGSNHSHYVRKNELYRVETNQTQAVKGQTEILTGKGKLDAVVEQFILASGTQLRLVSGHSAIELNANGKINLIGKSFNFFVEEDGHITTGGKLHLNAPGTKAPTTAPGADHKGNINSAVQAKFSPQGNVQHAAPVAAAPAGAAKPVTKYKAPPPLKGDYVFSNEKSKSQFMPFSDGVVKKINSSPKMQSDLKKLMDDQWNISPNVPGGGSWTDTKNKVMVLDPESMADDNEAVMTLAHEVGHATSPYKNDFSSKSNFVNGMLKDEGQATLNEIQVRREIYHNSGIDIGSMTDSSNEMKYIQAFKDMDSGKITRDEASKAIGEIYRRGEVASGSTTNEVYEDHYGNMYDDYMQGKAPH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9046 - -


  Protein sequence: 870 a.a.    

>T6CP015924 NZ_JZLI01000006:c152196-149587 [Kosakonia oryzae] [TssI]
MANRITATLPVGDLLFWKLSGREALSESFTLALTVLGTDARADRSKLLGQSATINIPTQGTGTRYINGKITRVAVSAVEL
SGTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTAPQIVKTLLGEYQVNVEDKLTGSYRTWDYCVQYQESSLDFISRLMELE
GIAYHFRHEADRHVLVLTDAATEHQPFSGYETIPYHQTPSGGSTDEEGISQWALEDSVTPGIYSLDDYDFRKPNAWLFQA
RQNPASPQPGSIDVYDWPGRFVEHGHGEYYARIRQERWQVEHQQIQGTATAVGVAPGNTFALYNAPFFSDNGEYLTTEAN
YFFEENRYASGSDGETVHRIDFTVIPSSVVFRPAAVTAWPKTYGPQTAKVVGPQGESIWTDKYGRVKVKFHWDRLAKGDD
TSSCWVRVSSAWAGQGFGGVQIPRVGDEVVIDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFLSRSKDGSVDNAN
ALRFEDKAGEEQVWIQAERNMDVHVKNDASRSIGSNHSHYVRKNELYRVETNQTQAVKGQTEILTGKGKLDAVVEQFILA
SGTQLRLVSGHSAIELNANGKINLIGKSFNFFVEEDGHITTGGKLHLNAPGTKAPTTAPGADHKGNINSAVQAKFSPQGN
VQHAAPVAAAPAGAAKPVTKYKAPPPLKGDYVFSNEKSKSQFMPFSDGVVKKINSSPKMQSDLKKLMDDQWNISPNVPGG
GSWTDTKNKVMVLDPESMADDNEAVMTLAHEVGHATSPYKNDFSSKSNFVNGMLKDEGQATLNEIQVRREIYHNSGIDIG
SMTDSSNEMKYIQAFKDMDSGKITRDEASKAIGEIYRRGEVASGSTTNEVYEDHYGNMYDDYMQGKAPH*

  Nucleotide sequence: 2610 bp    

>T6CP015924 NZ_JZLI01000006:c152196-149587 [Kosakonia oryzae] [TssI]
ATGGCGAACAGGATCACGGCGACGTTACCCGTCGGGGACTTACTTTTCTGGAAACTCTCCGGGCGCGAAGCGCTGTCGGA
GTCATTTACGCTGGCGCTGACGGTACTGGGCACCGATGCGCGGGCAGACCGCAGCAAGCTGCTGGGGCAATCCGCAACCA
TCAATATTCCCACCCAGGGAACGGGTACGCGCTATATCAACGGCAAAATCACCCGCGTGGCGGTGAGCGCCGTTGAACTT
TCGGGGACGCGTTACGCGGTGTACCAGCTCACCGTGGAGCCGGATTTGTGGCCGATGAAACGCGACCGCAACCTGCGTAT
CTTCCAGGGCCAGACTGCGCCGCAGATTGTGAAAACGCTGCTCGGCGAATATCAGGTGAACGTGGAAGATAAGCTGACCG
GCAGTTACCGCACCTGGGATTACTGCGTGCAGTACCAGGAATCGAGCCTCGATTTCATCAGCCGTCTGATGGAGCTTGAG
GGCATCGCCTACCATTTCCGCCACGAAGCCGACCGCCATGTGCTGGTGCTGACCGACGCGGCGACCGAACATCAACCCTT
CAGCGGCTACGAAACCATTCCCTATCACCAGACGCCGTCCGGCGGCAGCACGGATGAAGAGGGTATCAGCCAGTGGGCGC
TGGAGGACAGCGTGACGCCGGGTATTTACAGCCTCGACGATTACGACTTCCGCAAGCCGAACGCGTGGCTGTTCCAGGCG
CGGCAGAACCCGGCATCACCGCAGCCGGGCAGCATTGACGTGTATGACTGGCCGGGGCGTTTTGTCGAGCACGGTCACGG
GGAGTATTACGCGCGTATCCGCCAGGAGCGCTGGCAGGTGGAGCACCAGCAGATTCAGGGCACCGCCACGGCGGTTGGTG
TCGCACCGGGAAACACCTTTGCGCTGTATAACGCGCCGTTTTTCAGCGATAACGGCGAGTACCTGACCACCGAAGCGAAC
TACTTTTTCGAGGAAAACCGCTACGCCAGCGGCTCCGACGGCGAAACGGTGCACCGCATTGATTTCACCGTCATTCCGTC
GTCGGTGGTGTTCCGCCCGGCGGCGGTGACGGCGTGGCCGAAAACCTACGGTCCGCAGACGGCGAAAGTGGTCGGCCCGC
AGGGCGAAAGCATCTGGACGGATAAATATGGCCGGGTGAAGGTGAAATTCCACTGGGATCGTCTGGCAAAAGGCGATGAC
ACCAGCTCCTGCTGGGTGCGTGTGTCGAGTGCCTGGGCGGGGCAGGGCTTCGGCGGGGTGCAAATCCCGCGCGTGGGCGA
CGAAGTGGTGATCGACTTTATCAATGGCGACCCGGACCGGCCGATCGTTACCGGGCGCGTCTATAACGAAGCGAGTATGC
CGCCGTGGGCATTACCTGCTGCTGCCACGCAGATGGGTTTCCTCAGCCGCTCGAAAGATGGTTCGGTCGATAACGCCAAC
GCCCTGCGCTTTGAAGACAAGGCGGGCGAAGAGCAAGTGTGGATCCAGGCGGAACGAAACATGGATGTTCACGTCAAAAA
CGACGCCTCGCGCTCGATCGGCAGTAACCACAGCCACTATGTACGTAAAAATGAGCTGTACCGCGTCGAAACGAATCAGA
CGCAGGCCGTGAAAGGGCAAACGGAAATCCTTACCGGCAAAGGCAAGCTCGATGCGGTGGTGGAGCAGTTTATTCTGGCT
TCCGGGACGCAACTGCGGCTGGTATCCGGTCACAGCGCCATTGAGCTTAATGCGAACGGCAAAATCAACCTGATTGGTAA
ATCCTTTAACTTCTTTGTCGAAGAAGATGGGCACATTACCACCGGCGGTAAGTTGCATCTCAATGCTCCCGGAACAAAAG
CCCCGACTACCGCGCCAGGAGCTGACCATAAAGGGAATATTAACTCTGCGGTACAGGCGAAATTTTCCCCGCAGGGTAAC
GTGCAGCACGCGGCCCCTGTGGCAGCGGCTCCGGCGGGGGCGGCAAAACCGGTGACGAAATACAAAGCGCCGCCGCCGCT
GAAGGGGGATTATGTTTTTAGTAACGAGAAGAGTAAAAGTCAATTCATGCCGTTCAGTGATGGCGTCGTGAAGAAAATAA
ACAGTTCCCCCAAAATGCAGAGCGATTTAAAAAAACTCATGGATGATCAGTGGAATATATCACCTAACGTTCCAGGGGGT
GGAAGCTGGACCGATACGAAAAATAAAGTCATGGTATTAGATCCGGAAAGTATGGCGGATGATAATGAAGCGGTCATGAC
GTTAGCGCATGAAGTCGGCCATGCGACCAGCCCTTATAAAAATGACTTCAGCTCAAAAAGTAATTTTGTTAACGGCATGC
TTAAAGATGAAGGGCAGGCCACGCTGAATGAAATTCAGGTCCGCCGCGAAATTTATCATAATAGCGGTATAGATATTGGC
TCAATGACTGACTCATCGAATGAGATGAAATATATCCAGGCATTTAAAGATATGGACAGCGGAAAAATAACCCGCGATGA
AGCCAGTAAAGCAATTGGAGAAATTTACCGCAGGGGTGAAGTTGCATCCGGTTCAACTACCAATGAAGTTTATGAAGACC
ATTACGGGAATATGTACGATGACTATATGCAAGGTAAGGCACCTCACTAA