Detailed information of component protein
Summary
| Component ID | T6CP015929 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01282  (Type i3) |
| Strain | Kosakonia oryzae strain KO348 |
| Replicon | chromosome |
| Sequence | Protein sequence (190 a.a.); Nucleotide sequence (570 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | UG97_RS09120 |
| Coordinate (Strand) | 172867..173436 (-) |
| NCBI ID | 780193682 |
| RefSeq | NZ_JZLI01000006 |
| Uniprot ID | UPI0005F09703 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 5.3e-22 | 61..165 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-189 | MSNSAHDEESDLLRSGWRSRRGKDTVGARDKMQPSLLDRLTDDAPDKVQEPVNNNLVSHSALRRHVLRDLQWLFNTINNEAQQDLSGFDQVRRSVVNFGVSPLAGKRMSDIEWQDIQRKLTDAILHFEPRILPQGLQVRCISDTKSLDLHNVLSIEIKGRLWCVPYPLEFLFRTDVDLENGHFELKDAG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9882 | - | - |
Protein sequence: 190 a.a.
>T6CP015929 NZ_JZLI01000006:c173436-172867 [Kosakonia oryzae] [TssE]
MSNSAHDEESDLLRSGWRSRRGKDTVGARDKMQPSLLDRLTDDAPDKVQEPVNNNLVSHSALRRHVLRDLQWLFNTINNE
AQQDLSGFDQVRRSVVNFGVSPLAGKRMSDIEWQDIQRKLTDAILHFEPRILPQGLQVRCISDTKSLDLHNVLSIEIKGR
LWCVPYPLEFLFRTDVDLENGHFELKDAG*
MSNSAHDEESDLLRSGWRSRRGKDTVGARDKMQPSLLDRLTDDAPDKVQEPVNNNLVSHSALRRHVLRDLQWLFNTINNE
AQQDLSGFDQVRRSVVNFGVSPLAGKRMSDIEWQDIQRKLTDAILHFEPRILPQGLQVRCISDTKSLDLHNVLSIEIKGR
LWCVPYPLEFLFRTDVDLENGHFELKDAG*
Nucleotide sequence: 570 bp
>T6CP015929 NZ_JZLI01000006:c173436-172867 [Kosakonia oryzae] [TssE]
ATGAGTAACTCTGCGCATGATGAAGAGAGCGACCTGCTGCGTAGCGGCTGGCGCTCGCGGCGCGGGAAAGATACCGTTGG
CGCGCGCGATAAAATGCAGCCTTCGCTGCTCGATCGCCTGACGGATGACGCGCCGGATAAAGTGCAGGAGCCGGTGAACA
ACAATCTGGTTTCGCACTCCGCGCTGCGCCGCCATGTGCTGCGCGATTTGCAGTGGCTGTTCAACACCATTAATAACGAA
GCGCAACAGGATCTCTCCGGTTTTGACCAGGTGCGGCGTTCGGTGGTGAACTTTGGCGTGTCGCCGCTGGCGGGCAAGCG
CATGTCGGATATCGAATGGCAGGATATCCAGCGCAAACTGACCGACGCGATTTTGCATTTTGAACCGCGCATTCTTCCGC
AAGGATTGCAGGTGCGCTGCATCTCCGATACTAAGTCGCTGGATCTGCATAACGTCCTGTCGATTGAGATCAAAGGCCGC
CTGTGGTGCGTGCCTTATCCGCTGGAGTTCCTGTTTCGTACCGATGTGGATCTGGAAAACGGGCATTTCGAGCTGAAAGA
CGCGGGGTAA
ATGAGTAACTCTGCGCATGATGAAGAGAGCGACCTGCTGCGTAGCGGCTGGCGCTCGCGGCGCGGGAAAGATACCGTTGG
CGCGCGCGATAAAATGCAGCCTTCGCTGCTCGATCGCCTGACGGATGACGCGCCGGATAAAGTGCAGGAGCCGGTGAACA
ACAATCTGGTTTCGCACTCCGCGCTGCGCCGCCATGTGCTGCGCGATTTGCAGTGGCTGTTCAACACCATTAATAACGAA
GCGCAACAGGATCTCTCCGGTTTTGACCAGGTGCGGCGTTCGGTGGTGAACTTTGGCGTGTCGCCGCTGGCGGGCAAGCG
CATGTCGGATATCGAATGGCAGGATATCCAGCGCAAACTGACCGACGCGATTTTGCATTTTGAACCGCGCATTCTTCCGC
AAGGATTGCAGGTGCGCTGCATCTCCGATACTAAGTCGCTGGATCTGCATAACGTCCTGTCGATTGAGATCAAAGGCCGC
CTGTGGTGCGTGCCTTATCCGCTGGAGTTCCTGTTTCGTACCGATGTGGATCTGGAAAACGGGCATTTCGAGCTGAAAGA
CGCGGGGTAA