Detailed information of component protein


Summary

Component ID T6CP015925
Component protein type TssI
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (744 a.a.); Nucleotide sequence (2232 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09090
Coordinate (Strand) 162910..165141 (-)
NCBI ID 780193664
RefSeq NZ_JZLI01000006
Uniprot ID UPI0005EF0F9E
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 6.3e-84 22..326
Phage_base_V PF04717.14 1e-14 381..448
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-743 MQNRITATLPVGGLLFWKLAGREALSESFTLALTVLGTDARADRSKLLGQSATINIPTQGTGTRYINGKITRVAVSAVELSGTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTAPQIVKTLLGEYQVNVEDKLTGSYRTWDYCVQYQESSLDFISRLMELEGIAYHFRHEADRHVLVLTDAATEHQPFSGYETIPYHQTPSGGSTDEEGISQWALEDSVTPGIYSLDDYDFRKPNAWLFQARQNPASPQPGSIDVYDWPGRFVEHGHGEYYARIRQERWQVEHQQIQGTATAVGVAPGNTFALYNAPFFSDNGEYLTTEANYFFEENRYASGSDGETVHRIDFTVIPSSVVFRPAAVTAWPKTYGPQTAKVVGPQGESIWTDKYGRVKVKFHWDRLAKGDDTSSCWVRVSSAWAGQGFGGVQIPRVGDEVVIDFINGDPDRPIVTGRVYNESSMPPWTLPDDSTRMGFMTRSKDGSKDNASYLFFEDRAGSEAVELHSEKDMKVSVENDKTVNIDGNRTTTILKEQKDDVTGDASFYYRAKRTTTVDEAETTTFNNSQTETIKNGRTLNITSGGDVVTVKEGRITEVEGTESHHVTGLVTEKFDSGQMTTIEGGLTVDVNSGNWTQNVNGGTITISSPNMIRISSKEQIVMDAPEAVFKPKFHTLSVTAFSESFVGHSASGTGMTSSATGIALSANGMSIGFKLKDLSKTLFKKEANGVVINYEVTNISNRTLNITNNALYIFT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6536 - -


  Protein sequence: 744 a.a.    

>T6CP015925 NZ_JZLI01000006:c165141-162910 [Kosakonia oryzae] [TssI]
MQNRITATLPVGGLLFWKLAGREALSESFTLALTVLGTDARADRSKLLGQSATINIPTQGTGTRYINGKITRVAVSAVEL
SGTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTAPQIVKTLLGEYQVNVEDKLTGSYRTWDYCVQYQESSLDFISRLMELE
GIAYHFRHEADRHVLVLTDAATEHQPFSGYETIPYHQTPSGGSTDEEGISQWALEDSVTPGIYSLDDYDFRKPNAWLFQA
RQNPASPQPGSIDVYDWPGRFVEHGHGEYYARIRQERWQVEHQQIQGTATAVGVAPGNTFALYNAPFFSDNGEYLTTEAN
YFFEENRYASGSDGETVHRIDFTVIPSSVVFRPAAVTAWPKTYGPQTAKVVGPQGESIWTDKYGRVKVKFHWDRLAKGDD
TSSCWVRVSSAWAGQGFGGVQIPRVGDEVVIDFINGDPDRPIVTGRVYNESSMPPWTLPDDSTRMGFMTRSKDGSKDNAS
YLFFEDRAGSEAVELHSEKDMKVSVENDKTVNIDGNRTTTILKEQKDDVTGDASFYYRAKRTTTVDEAETTTFNNSQTET
IKNGRTLNITSGGDVVTVKEGRITEVEGTESHHVTGLVTEKFDSGQMTTIEGGLTVDVNSGNWTQNVNGGTITISSPNMI
RISSKEQIVMDAPEAVFKPKFHTLSVTAFSESFVGHSASGTGMTSSATGIALSANGMSIGFKLKDLSKTLFKKEANGVVI
NYEVTNISNRTLNITNNALYIFT*

  Nucleotide sequence: 2232 bp    

>T6CP015925 NZ_JZLI01000006:c165141-162910 [Kosakonia oryzae] [TssI]
ATGCAGAACAGAATCACGGCGACGTTACCCGTCGGGGGCTTACTTTTCTGGAAACTTGCCGGGCGCGAAGCGCTGTCCGA
GTCATTTACGCTGGCGCTGACGGTGCTGGGCACCGATGCGCGGGCAGACCGCAGCAAGCTGCTGGGGCAATCCGCAACCA
TCAATATTCCCACCCAGGGAACGGGTACGCGCTATATCAACGGCAAAATCACCCGCGTGGCGGTGAGCGCCGTTGAACTT
TCGGGGACGCGTTACGCGGTGTACCAGCTCACCGTGGAGCCGGATTTGTGGCCGATGAAACGCGACCGCAACCTGCGTAT
CTTCCAGGGCCAGACTGCGCCGCAGATTGTGAAAACGCTGCTCGGCGAATATCAGGTGAACGTGGAAGATAAGCTGACCG
GCAGTTACCGCACCTGGGATTACTGCGTGCAGTACCAGGAATCGAGCCTCGATTTCATCAGCCGTCTGATGGAGCTTGAG
GGCATCGCCTACCATTTCCGCCACGAAGCCGACCGCCATGTGCTGGTGCTGACCGACGCGGCGACCGAACATCAACCCTT
CAGCGGCTACGAAACCATTCCCTATCACCAGACGCCGTCCGGCGGCAGCACGGATGAAGAGGGTATCAGCCAGTGGGCGC
TGGAGGACAGCGTGACGCCGGGTATTTACAGCCTCGACGATTACGACTTCCGCAAGCCGAACGCGTGGCTGTTCCAGGCG
CGGCAGAACCCGGCATCACCGCAGCCGGGCAGCATTGACGTGTATGACTGGCCGGGGCGTTTTGTCGAGCACGGTCACGG
GGAGTATTACGCGCGTATCCGCCAGGAGCGCTGGCAGGTGGAGCACCAGCAGATTCAGGGCACCGCCACGGCGGTTGGTG
TCGCACCGGGAAACACCTTTGCGCTGTATAACGCGCCGTTTTTCAGCGATAACGGCGAGTACCTGACCACCGAAGCGAAC
TACTTTTTCGAGGAAAACCGCTACGCCAGCGGCTCCGACGGCGAAACGGTGCACCGCATTGATTTCACCGTCATTCCGTC
GTCGGTGGTGTTCCGCCCGGCGGCGGTGACGGCGTGGCCGAAAACCTACGGTCCGCAGACGGCGAAAGTGGTCGGCCCGC
AGGGCGAAAGCATCTGGACGGATAAATATGGCCGGGTGAAGGTGAAATTCCACTGGGATCGTCTGGCAAAAGGCGATGAC
ACCAGCTCCTGCTGGGTGCGTGTGTCGAGTGCCTGGGCGGGGCAGGGCTTCGGCGGGGTGCAAATCCCGCGCGTGGGCGA
CGAAGTGGTGATCGACTTTATCAACGGCGACCCGGACCGGCCGATCGTTACCGGGCGTGTCTATAATGAATCCAGCATGC
CGCCGTGGACACTGCCGGATGATTCAACGCGCATGGGCTTTATGACCCGCAGTAAAGACGGCAGCAAAGACAACGCCAGC
TACCTGTTTTTTGAGGATCGCGCCGGGAGTGAAGCTGTTGAGTTGCATTCCGAAAAAGATATGAAAGTCTCGGTGGAAAA
TGACAAGACGGTCAACATTGACGGTAATCGCACGACGACCATTCTGAAAGAGCAGAAAGACGATGTCACCGGCGACGCCT
CGTTTTACTATCGCGCGAAGCGCACGACCACGGTAGATGAAGCGGAAACCACCACCTTCAACAACAGCCAGACGGAAACT
ATCAAGAATGGGCGTACGCTGAATATCACCAGCGGCGGTGATGTTGTGACTGTGAAAGAGGGGCGCATCACTGAGGTGGA
AGGTACTGAGTCACATCACGTTACGGGGCTGGTGACGGAGAAATTTGATAGTGGTCAGATGACGACTATTGAAGGGGGGC
TGACTGTCGATGTTAATAGCGGTAACTGGACGCAAAATGTCAATGGTGGGACGATAACTATCAGTAGCCCTAACATGATA
AGAATTTCCAGCAAAGAGCAAATTGTCATGGATGCACCAGAGGCAGTGTTTAAGCCTAAATTCCATACTCTAAGCGTGAC
GGCATTTAGTGAAAGTTTTGTAGGACATAGCGCATCCGGAACAGGAATGACATCAAGTGCAACGGGGATTGCTTTATCAG
CAAATGGTATGTCTATTGGTTTTAAACTGAAAGATCTTTCTAAGACCCTGTTTAAGAAAGAGGCGAATGGTGTTGTTATA
AACTATGAAGTAACTAATATTAGTAACAGGACGCTAAACATCACCAATAATGCTCTTTATATATTTACTTAG