Detailed information of effector


Summary

Effector ID EFF01839 experimental
Effector type -
Cognate immunity protein -
Related T6SS (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (642 a.a.); Nucleotide sequence (1926 bp)
Description VgrG
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) UG97_RS03505
Coordinates (Strand) 281642..283567 (+)
NCBI ID 521291363
RefSeq NZ_JZLI01000002
Uniprot ID R9VPI0_9ENTR
KEGG ID enr:H650_13855
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 9.2e-85 22..328
Phage_base_V PF04717.14 1.1e-14 383..450
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-641 MSNRITVQLPVDGLLFWKISGREALSEAFTFNLQLLGTDARMDRSTLLGKSVTVAIPTQTLTGAPRYLNGKITRVAVSAVELSGTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTVPQIVKTLLGEYQVNIEDKLTGSYRTWDYCVQYQESSFDFISRLMELEGIAYHFRHEADKHTLVLTDAATQHDPFSGYETIPYHQTPSGGSTDEEGISQWALEDSVTPGLYSLDDYDFRKPNAWLFQARQNPSSPTPGTIDVYDWPGRFVEHGHGEFYARIRQERWQVEHQQIEGTATAIGIVPGSTFQLTNAAFFNDNGEYLVTAANYFFEENRYASGADSETIHRIDFSVIPSSVVFRPAQQTAWPRTYGPQTARVVGPQGESIWTDKYGRVKVKFHWDRLAKGDDTSSCWVRVSSAWAGQGFGGVQIPRVGDEVVIDFINGDPDRPIITGRVYNEASMPPWALPAAATQMGFLSRSKDGSVDNANALRFEDKAGEEQVWIQAERNMDTHVKNDETHTVGGSQSVSVTRDYTGSVAGKHTQATQLSHEQLVGGGFTQMVQGPLVQASDNSIQLVAGQSVLTLGANGTVTLKCVDFQIDAIGSGAINTAGLLDLNLTKPTKGEDAQPTIAQIQAAVKAAFNQGTDK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9716 - -


  Protein sequence: 642 a.a.    .

>EFF01839 NZ_JZLI01000002:281642-283567 (Unknown) [Kosakonia oryzae]
MSNRITVQLPVDGLLFWKISGREALSEAFTFNLQLLGTDARMDRSTLLGKSVTVAIPTQTLTGAPRYLNGKITRVAVSAV
ELSGTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTVPQIVKTLLGEYQVNIEDKLTGSYRTWDYCVQYQESSFDFISRLME
LEGIAYHFRHEADKHTLVLTDAATQHDPFSGYETIPYHQTPSGGSTDEEGISQWALEDSVTPGLYSLDDYDFRKPNAWLF
QARQNPSSPTPGTIDVYDWPGRFVEHGHGEFYARIRQERWQVEHQQIEGTATAIGIVPGSTFQLTNAAFFNDNGEYLVTA
ANYFFEENRYASGADSETIHRIDFSVIPSSVVFRPAQQTAWPRTYGPQTARVVGPQGESIWTDKYGRVKVKFHWDRLAKG
DDTSSCWVRVSSAWAGQGFGGVQIPRVGDEVVIDFINGDPDRPIITGRVYNEASMPPWALPAAATQMGFLSRSKDGSVDN
ANALRFEDKAGEEQVWIQAERNMDTHVKNDETHTVGGSQSVSVTRDYTGSVAGKHTQATQLSHEQLVGGGFTQMVQGPLV
QASDNSIQLVAGQSVLTLGANGTVTLKCVDFQIDAIGSGAINTAGLLDLNLTKPTKGEDAQPTIAQIQAAVKAAFNQGTD
K*

  Nucleotide sequence: 1926 bp    .

>EFF01839 NZ_JZLI01000002:281642-283567 (Unknown) [Kosakonia oryzae]
ATGAGCAATCGAATTACTGTTCAGTTACCCGTCGATGGACTGCTTTTCTGGAAAATCTCCGGACGGGAAGCGCTGTCCGA
AGCCTTCACCTTTAACCTGCAGTTGCTGGGCACCGACGCGCGAATGGACCGCAGCACGCTGCTGGGTAAATCGGTGACTG
TCGCAATACCAACACAAACGCTGACCGGCGCGCCGCGCTACCTTAACGGCAAAATCACCCGCGTGGCGGTGAGCGCCGTT
GAGCTTTCCGGCACCCGTTATGCGGTGTATCAACTCACCGTCGAGCCGGATCTCTGGCCGATGAAGCGCGACCGCAACCT
GCGTATCTTCCAGGGCCAGACAGTACCGCAAATCGTCAAAACCCTGCTCGGCGAATACCAGGTCAACATTGAAGACAAAC
TGACCGGCAGCTATCGCACCTGGGACTACTGCGTGCAGTACCAGGAGAGCAGCTTTGATTTCATCAGCCGCCTGATGGAG
CTGGAAGGCATCGCTTACCACTTCCGCCACGAAGCGGACAAACACACGCTGGTGCTGACGGATGCGGCGACTCAGCATGA
TCCCTTCAGTGGTTACGAAACCATCCCTTATCACCAGACCCCTTCCGGTGGCAGCACCGATGAAGAAGGCATCAGCCAGT
GGGCGCTGGAAGATAGCGTAACGCCGGGGCTTTACAGCCTTGATGACTACGATTTCCGCAAACCCAACGCGTGGTTGTTT
CAGGCGCGGCAAAATCCGAGTTCACCCACGCCGGGCACCATCGATGTTTATGACTGGCCAGGGCGCTTTGTCGAACACGG
TCACGGCGAGTTTTATGCCCGCATCCGCCAGGAACGCTGGCAGGTGGAGCATCAGCAAATTGAAGGCACGGCGACAGCGA
TTGGTATTGTGCCGGGCAGTACGTTCCAGTTGACCAATGCGGCGTTCTTTAACGATAACGGCGAGTATCTGGTGACGGCG
GCGAACTACTTTTTTGAAGAGAACCGCTACGCCAGCGGCGCTGACAGCGAAACCATTCACCGCATTGATTTCAGCGTTAT
CCCCTCATCGGTGGTGTTCCGCCCGGCGCAGCAAACCGCGTGGCCGCGCACGTACGGCCCGCAAACTGCGCGTGTTGTTG
GCCCGCAGGGGGAAAGCATCTGGACGGATAAATATGGCCGCGTGAAGGTGAAATTCCACTGGGACCGGCTGGCGAAAGGC
GATGACACCAGTTCCTGCTGGGTGCGTGTCTCCAGCGCATGGGCCGGGCAGGGCTTCGGCGGCGTACAGATCCCGCGCGT
GGGCGACGAAGTGGTGATCGACTTTATCAACGGCGACCCGGACCGACCGATTATCACCGGACGTGTCTATAACGAAGCGA
GTATGCCGCCGTGGGCGCTGCCCGCTGCCGCCACGCAAATGGGCTTCCTTAGCCGCTCAAAAGACGGTTCGGTAGACAAC
GCCAACGCCCTGCGCTTTGAAGATAAAGCAGGCGAAGAACAGGTGTGGATCCAGGCGGAACGTAACATGGATACGCACGT
CAAAAATGACGAGACGCATACCGTCGGCGGTTCACAAAGCGTGAGCGTCACGCGGGATTACACCGGTTCGGTAGCGGGCA
AACACACCCAGGCAACGCAGCTTTCGCACGAACAACTGGTCGGCGGCGGCTTTACACAGATGGTGCAAGGGCCGCTGGTG
CAGGCTTCTGACAACAGTATTCAGCTGGTGGCGGGGCAATCGGTGCTGACGCTGGGCGCGAACGGCACCGTCACGCTGAA
ATGCGTGGATTTTCAGATCGATGCTATCGGTTCGGGGGCTATCAACACCGCAGGCCTGCTGGATTTAAACCTGACAAAAC
CGACAAAAGGTGAAGATGCGCAGCCCACCATTGCGCAGATCCAGGCGGCGGTAAAAGCGGCATTTAATCAAGGGACGGAT
AAATAA