Detailed information of component protein


Summary

Component ID T6CP015932
Component protein type TssC
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (501 a.a.); Nucleotide sequence (1503 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09175
Coordinate (Strand) 182428..183930 (-)
NCBI ID 512737852
RefSeq NZ_JZLI01000006
Uniprot ID R9VI40_9ENTR
KEGG ID enr:H650_00790
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.3e-138 69..371
VipB_2 PF18945.2 1.9e-44 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-500 MSNPSQQQELQQGAQAFSQDEFSALLSKEFRPKTDQARSAVESAVKTLAQQALENTVTFSSDTYRTIQNLIAGIDEKLSQQINQIIHHEDFQKLESAWRGLSHLVNNTETDEMLKIRFMSISKQELGRNLKRYKGVGWDQSPLFKKIYEEEYGQFGGEPFGCLVGDYYFDHSPQDVELLGEMARIGAAAHCPFITGTAPSVMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYLGLVMPRFLSRLPYGIRTNPVDSFDFEEETDGANHNNYSWANAAYAMATNINRSFKEYGWCTSIRGVESGGAVENLPCHTFPSDDGGVDMKCPTEIAISDRREAELAKNGFMPLIHRKNSDFAAFIGAQSLQKPMEYHDADATANARLASRLPYLFACCRFAHYLKCIVRDKIGSFRERDEMERWLNDWVMNYVDGDPANSSQETKARKPLAAAEVQVQEIEDNPGYYAAKFFLRPHYQLEGLTVSLRLVSKLPSLKTKEA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9630 - -


  Protein sequence: 501 a.a.    

>T6CP015932 NZ_JZLI01000006:c183930-182428 [Kosakonia oryzae] [TssC]
MSNPSQQQELQQGAQAFSQDEFSALLSKEFRPKTDQARSAVESAVKTLAQQALENTVTFSSDTYRTIQNLIAGIDEKLSQ
QINQIIHHEDFQKLESAWRGLSHLVNNTETDEMLKIRFMSISKQELGRNLKRYKGVGWDQSPLFKKIYEEEYGQFGGEPF
GCLVGDYYFDHSPQDVELLGEMARIGAAAHCPFITGTAPSVMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYL
GLVMPRFLSRLPYGIRTNPVDSFDFEEETDGANHNNYSWANAAYAMATNINRSFKEYGWCTSIRGVESGGAVENLPCHTF
PSDDGGVDMKCPTEIAISDRREAELAKNGFMPLIHRKNSDFAAFIGAQSLQKPMEYHDADATANARLASRLPYLFACCRF
AHYLKCIVRDKIGSFRERDEMERWLNDWVMNYVDGDPANSSQETKARKPLAAAEVQVQEIEDNPGYYAAKFFLRPHYQLE
GLTVSLRLVSKLPSLKTKEA*

  Nucleotide sequence: 1503 bp    

>T6CP015932 NZ_JZLI01000006:c183930-182428 [Kosakonia oryzae] [TssC]
ATGAGCAACCCTTCTCAACAGCAAGAACTGCAGCAGGGCGCACAGGCCTTCAGCCAGGATGAATTCAGCGCGCTGCTCAG
CAAAGAGTTCCGTCCGAAAACGGATCAGGCGCGTTCAGCGGTAGAAAGCGCGGTGAAAACGCTGGCGCAACAGGCGCTGG
AAAACACCGTCACCTTCTCCAGCGATACCTATCGCACCATTCAGAACCTGATTGCCGGGATTGATGAAAAGCTGTCGCAG
CAGATTAACCAGATCATCCACCACGAAGATTTCCAGAAACTGGAAAGCGCGTGGCGCGGTCTGAGCCATCTGGTGAACAA
CACCGAAACCGACGAGATGCTGAAAATTCGCTTTATGAGCATCTCCAAGCAGGAACTGGGCCGTAACCTGAAACGCTACA
AAGGCGTGGGCTGGGACCAGAGCCCGCTGTTCAAAAAAATCTATGAAGAAGAGTATGGCCAGTTCGGCGGCGAACCGTTT
GGCTGCCTGGTTGGCGACTACTACTTCGACCACAGCCCGCAGGATGTCGAACTGCTGGGCGAAATGGCGCGCATCGGCGC
GGCGGCACACTGCCCGTTCATTACCGGTACTGCACCAAGCGTGATGCAGATGGAGTCCTGGCAGGAGCTGGCGAACCCGC
GCGATCTGACAAAAATCTTCCAGAACACCGAATATGCCGCCTGGCGTTCACTGCGTGAATCTGAAGATGCCCGTTACCTT
GGCCTGGTCATGCCGCGCTTCCTGTCGCGTCTGCCGTACGGTATCCGCACCAACCCGGTTGACAGCTTCGATTTCGAAGA
AGAGACCGATGGCGCGAACCACAACAACTATTCGTGGGCGAACGCGGCCTACGCGATGGCGACCAACATCAACCGTTCCT
TCAAAGAGTACGGCTGGTGTACCTCGATTCGCGGTGTGGAATCCGGTGGTGCGGTAGAAAACCTGCCATGCCATACCTTC
CCGAGCGATGACGGCGGCGTGGACATGAAGTGCCCGACCGAGATCGCCATCAGCGACCGTCGCGAAGCAGAACTGGCGAA
AAACGGCTTTATGCCGCTTATCCACCGTAAAAACTCCGACTTCGCCGCCTTTATTGGCGCACAGTCGCTGCAAAAACCGA
TGGAGTACCACGACGCCGACGCGACCGCTAACGCACGTCTCGCCTCGCGTCTGCCGTATCTGTTCGCCTGCTGCCGTTTT
GCGCACTACCTGAAGTGCATTGTGCGCGACAAAATCGGCTCATTCCGCGAGCGTGACGAAATGGAACGCTGGCTGAACGA
CTGGGTGATGAACTACGTCGACGGCGACCCGGCGAACTCCTCGCAGGAAACCAAAGCGCGTAAACCGCTGGCTGCGGCAG
AAGTGCAGGTGCAGGAAATCGAAGATAACCCTGGTTACTACGCGGCGAAATTCTTCCTGCGTCCGCACTACCAGCTGGAA
GGTCTGACCGTTTCTCTGCGTCTGGTATCCAAACTGCCGTCGCTGAAAACCAAAGAGGCGTAA