Detailed information of component protein


Summary

Component ID T6CP015936
Component protein type TssM
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (1204 a.a.); Nucleotide sequence (3612 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09195
Coordinate (Strand) 186287..189898 (-)
NCBI ID 780193716
RefSeq NZ_JZLI01000006
Uniprot ID UPI0005EF50EB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 7.2e-91 208..477
IcmF-related PF06761.14 5.5e-80 529..832
IcmF_C PF06744.14 1e-21 1086..1189
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MNMLLSLLTNRI
Transmembrane helix 13-35 LWGFLGVTGLAAVIWMIGPLLSV
Outside 36-49 VDSRPLESEQNRMI
Transmembrane helix 50-72 TIAVMYLIWVHSHIVPRLYNAWL
Inside 73-468 NRKLMDNLKSEEAKDPVERKRLNNEDQVLNERFEEAAQVLKKAHFNQPGQRGQWAQRFSTQYLYQLPWYVIIGAPGSGKTTALVNSGLQFPLADRFGKTALRGIGGTRNCDWWFTNEAVLLDTAGRYTTQESEQVQDASEWLKFLGLLQKYRRRQPINGVIVTVSIADLLTQSAEASREQALNLRQRLTELHEQLGIRFPVYVLVTKADLLKGFRAYFAGFDKAQRDQIWGFTFPWEKAKLADFDLQGSFIQEFALLQQRLDAALPDTLLRESDAQARAECFLFPQEFAALRPLLADYLNTIFARSNFETEFSPRGIYFASGTQEGLPFDRVMGELNRALSLPQGKSGDNWDSVSKEEPVPGGKGQSFFIKHLLQNVIFQEAGIAGQNRWWELRSR
Transmembrane helix 469-491 AVIWSGYAALLALLIIISALWFT
Outside 492-1203 SYGNNRDYLDEVQTKVPALDQQIKALRNRQQGDLFALLPLLNGLSALPESEKFDVNNPPITRRMGLYRGNDVADASQTLYQKALQQMLLPEVAMRITTWLRNDNGSDVEYSYEALKAYQMLYQPKHYDGKFLHSWVMLNLQRNLPQNVTKAQLSQLEWHLTQLLEPQIQSSPYAKDEALISREQALINQQPLSTRVYGRLKRLLERDENLKQVSLASLGGPQSELVFSRKSGKPVGEGLPGLYTPDGYWNSFNAQIAPVTASLHEDDVWVLGSTTQAEDKQQTDNAVRQLYARDFIAIWDNFLSDIQLNNSADLNQRINTARLLSGNNSPLRRLVINLSQQLKLSRDDVADGKEKAPESSNRGTQMLETLFSNHDGASATANAAASQTPEQRVTEHFAPIIELAQPLEKGGKTIVFDDFLKQVDELYRYLTAVQDAANSGMPPPGGEAISRLQASAGRLPGGLQTMFSNMAVGASSDTQRRDMENVRKRISVEVGSFCRQAIAGRYPLVRSASSEVTPDDLARMFAPGTGLMDVFFRDNLTNKVDTTQATWRFMPGIDGKTLPGSEGVLVPFQQAQSIRDAFFANGSATPSFRTTVRTVRMDNTILNMTLDVDGQILRYSHGPQAVQIVSWPGSGGTNQVRMQLGLANGTTATLVTNGAWALNRFFDKARVSPGSSSLSRQATFTVDGHQVTLEFAPNSIRNPFQLPRFACP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9885 - -


  Protein sequence: 1204 a.a.    

>T6CP015936 NZ_JZLI01000006:c189898-186287 [Kosakonia oryzae] [TssM]
MNMLLSLLTNRILWGFLGVTGLAAVIWMIGPLLSVVDSRPLESEQNRMITIAVMYLIWVHSHIVPRLYNAWLNRKLMDNL
KSEEAKDPVERKRLNNEDQVLNERFEEAAQVLKKAHFNQPGQRGQWAQRFSTQYLYQLPWYVIIGAPGSGKTTALVNSGL
QFPLADRFGKTALRGIGGTRNCDWWFTNEAVLLDTAGRYTTQESEQVQDASEWLKFLGLLQKYRRRQPINGVIVTVSIAD
LLTQSAEASREQALNLRQRLTELHEQLGIRFPVYVLVTKADLLKGFRAYFAGFDKAQRDQIWGFTFPWEKAKLADFDLQG
SFIQEFALLQQRLDAALPDTLLRESDAQARAECFLFPQEFAALRPLLADYLNTIFARSNFETEFSPRGIYFASGTQEGLP
FDRVMGELNRALSLPQGKSGDNWDSVSKEEPVPGGKGQSFFIKHLLQNVIFQEAGIAGQNRWWELRSRAVIWSGYAALLA
LLIIISALWFTSYGNNRDYLDEVQTKVPALDQQIKALRNRQQGDLFALLPLLNGLSALPESEKFDVNNPPITRRMGLYRG
NDVADASQTLYQKALQQMLLPEVAMRITTWLRNDNGSDVEYSYEALKAYQMLYQPKHYDGKFLHSWVMLNLQRNLPQNVT
KAQLSQLEWHLTQLLEPQIQSSPYAKDEALISREQALINQQPLSTRVYGRLKRLLERDENLKQVSLASLGGPQSELVFSR
KSGKPVGEGLPGLYTPDGYWNSFNAQIAPVTASLHEDDVWVLGSTTQAEDKQQTDNAVRQLYARDFIAIWDNFLSDIQLN
NSADLNQRINTARLLSGNNSPLRRLVINLSQQLKLSRDDVADGKEKAPESSNRGTQMLETLFSNHDGASATANAAASQTP
EQRVTEHFAPIIELAQPLEKGGKTIVFDDFLKQVDELYRYLTAVQDAANSGMPPPGGEAISRLQASAGRLPGGLQTMFSN
MAVGASSDTQRRDMENVRKRISVEVGSFCRQAIAGRYPLVRSASSEVTPDDLARMFAPGTGLMDVFFRDNLTNKVDTTQA
TWRFMPGIDGKTLPGSEGVLVPFQQAQSIRDAFFANGSATPSFRTTVRTVRMDNTILNMTLDVDGQILRYSHGPQAVQIV
SWPGSGGTNQVRMQLGLANGTTATLVTNGAWALNRFFDKARVSPGSSSLSRQATFTVDGHQVTLEFAPNSIRNPFQLPRF
ACP*

  Nucleotide sequence: 3612 bp    

>T6CP015936 NZ_JZLI01000006:c189898-186287 [Kosakonia oryzae] [TssM]
ATGAATATGTTGCTTTCATTGCTGACCAACCGCATTTTGTGGGGTTTCCTTGGCGTAACGGGGCTGGCCGCGGTTATCTG
GATGATTGGCCCGCTGCTCTCCGTCGTGGATTCCCGCCCGCTTGAGTCTGAGCAAAACCGCATGATCACCATTGCGGTGA
TGTACCTGATTTGGGTTCACAGCCACATTGTGCCGCGTCTTTACAACGCCTGGCTCAACCGCAAGCTGATGGACAACCTG
AAAAGCGAAGAGGCAAAAGATCCGGTTGAGCGCAAACGCCTCAATAACGAAGATCAGGTGCTGAACGAGCGTTTCGAAGA
AGCCGCGCAGGTACTGAAAAAAGCGCACTTCAACCAGCCAGGTCAGCGCGGACAGTGGGCGCAGCGCTTCAGCACCCAGT
ATCTGTATCAACTGCCATGGTATGTGATTATCGGTGCGCCGGGTTCCGGTAAAACCACTGCGCTGGTCAACTCTGGCCTG
CAATTCCCCCTGGCGGATCGCTTCGGTAAAACCGCGCTGCGCGGTATTGGCGGTACGCGTAACTGTGACTGGTGGTTTAC
CAACGAGGCTGTGCTGCTCGATACCGCCGGGCGTTATACCACGCAGGAGAGCGAGCAGGTTCAGGATGCGAGCGAATGGC
TGAAGTTTCTTGGCCTGCTGCAAAAGTATCGCCGCCGTCAGCCGATCAACGGCGTGATTGTGACGGTCAGCATTGCCGAT
CTGCTCACCCAGTCAGCCGAGGCATCGCGCGAACAGGCGCTTAACCTGCGCCAGCGTTTGACCGAGTTGCATGAACAACT
GGGGATCCGTTTCCCGGTGTATGTGCTGGTGACCAAAGCGGACTTGCTGAAAGGTTTTCGCGCGTATTTTGCTGGCTTTG
ATAAAGCGCAGCGCGATCAAATCTGGGGTTTCACCTTCCCGTGGGAAAAAGCCAAACTGGCGGATTTCGACCTGCAGGGC
AGTTTTATTCAGGAATTCGCGCTGCTGCAACAGCGTCTGGACGCGGCCCTGCCGGATACGCTACTGCGTGAAAGCGATGC
GCAAGCCCGCGCGGAATGTTTCCTGTTCCCGCAGGAGTTCGCCGCGCTGCGTCCGCTGCTGGCAGATTACCTGAACACCA
TTTTTGCCCGCTCTAACTTTGAAACCGAGTTCTCCCCGCGCGGCATCTATTTTGCCAGCGGTACGCAGGAAGGCCTGCCG
TTTGACCGCGTGATGGGTGAACTGAACCGCGCGCTGTCGCTGCCGCAGGGCAAATCAGGCGATAACTGGGATTCGGTCAG
CAAAGAGGAACCGGTGCCGGGCGGGAAAGGGCAGAGCTTCTTTATCAAGCATCTGCTGCAAAACGTGATCTTCCAGGAAG
CCGGTATCGCCGGGCAAAACCGCTGGTGGGAACTGCGCAGCCGGGCGGTGATCTGGTCCGGTTATGCGGCGCTGCTGGCG
CTGCTGATTATTATCAGCGCCTTGTGGTTTACCAGCTACGGCAACAACCGTGATTATCTGGATGAAGTGCAGACCAAAGT
ACCGGCCCTTGACCAGCAGATCAAAGCGCTGCGTAACCGCCAGCAGGGCGATCTCTTTGCCTTGCTGCCGCTGCTTAATG
GCCTCTCTGCGCTGCCGGAAAGCGAGAAGTTTGACGTCAATAACCCGCCGATCACCCGCCGTATGGGGCTCTATCGCGGT
AACGATGTGGCGGACGCCTCGCAAACCCTGTACCAGAAAGCGCTGCAACAGATGCTGCTGCCGGAAGTGGCGATGCGCAT
CACTACCTGGTTGCGTAACGACAACGGCAGCGATGTGGAATACAGCTATGAAGCGCTGAAAGCCTATCAGATGCTGTATC
AGCCGAAGCATTACGACGGTAAGTTCCTGCACTCGTGGGTGATGCTCAATCTGCAACGTAACCTGCCGCAGAACGTTACC
AAAGCGCAGTTAAGCCAGCTTGAGTGGCACCTGACGCAACTGCTGGAGCCGCAAATTCAGTCGTCGCCGTATGCCAAAGA
CGAGGCGCTGATTAGCCGCGAACAGGCGTTAATTAACCAGCAACCGCTCTCCACCCGCGTTTACGGACGGCTGAAACGCC
TGCTGGAGCGCGATGAAAACCTGAAGCAGGTTTCGCTGGCGTCGCTTGGCGGCCCGCAGAGTGAACTGGTTTTTTCCCGC
AAAAGCGGTAAGCCGGTCGGTGAAGGGCTGCCGGGGTTGTATACCCCGGATGGGTACTGGAACAGTTTCAATGCGCAAAT
CGCGCCGGTCACCGCCTCGCTGCATGAAGATGATGTCTGGGTGCTTGGCTCCACCACGCAAGCGGAAGACAAACAGCAAA
CCGATAACGCGGTGCGCCAGTTGTATGCACGGGATTTTATCGCCATCTGGGATAACTTCTTAAGTGACATTCAGCTTAAT
AACAGCGCGGATCTGAACCAGCGCATCAATACCGCGCGTCTGCTTTCCGGAAACAACTCACCGCTGCGCCGGCTGGTTAT
CAATCTCAGCCAGCAGTTGAAACTCAGCCGTGATGACGTGGCGGATGGTAAAGAGAAAGCGCCGGAGAGCAGCAACCGTG
GTACGCAGATGCTCGAAACGCTGTTCAGCAACCATGACGGCGCGTCAGCGACGGCAAACGCCGCCGCCAGCCAGACGCCG
GAACAGCGTGTCACCGAACATTTCGCGCCGATCATCGAACTGGCGCAGCCGCTGGAAAAGGGCGGCAAGACCATTGTGTT
TGATGATTTTCTCAAACAGGTTGATGAGCTATATCGTTACCTGACTGCCGTGCAGGATGCCGCCAACAGCGGTATGCCAC
CGCCGGGCGGCGAAGCAATCAGCCGTTTGCAGGCCAGTGCCGGGCGTTTACCTGGCGGGCTGCAAACCATGTTCAGCAAC
ATGGCGGTTGGCGCGAGCAGTGATACCCAGCGCCGGGATATGGAAAACGTGCGCAAGCGCATCAGCGTGGAAGTGGGCAG
CTTTTGCCGCCAGGCGATTGCCGGACGCTACCCGTTAGTGCGTTCCGCCAGCAGCGAAGTTACCCCCGACGATCTGGCAC
GCATGTTTGCCCCTGGTACTGGCCTGATGGATGTCTTTTTTCGCGACAACCTGACCAACAAAGTCGATACCACTCAGGCG
ACATGGCGTTTTATGCCGGGCATCGATGGCAAAACCCTGCCGGGCAGCGAAGGGGTGCTGGTGCCGTTTCAGCAAGCGCA
ATCGATTCGTGACGCGTTCTTTGCCAACGGCAGCGCAACACCGTCGTTTCGCACCACGGTGCGTACGGTGCGCATGGATA
ACACCATCCTGAATATGACGCTGGATGTAGACGGACAAATCCTTCGCTACAGCCACGGCCCGCAGGCGGTGCAAATCGTT
AGCTGGCCGGGTTCCGGCGGCACCAACCAGGTGCGGATGCAGTTAGGGCTGGCCAACGGTACAACCGCTACGCTGGTGAC
CAACGGCGCCTGGGCGCTGAACCGCTTTTTCGATAAAGCGCGCGTCAGCCCCGGCAGCAGTAGCCTGAGCCGCCAGGCGA
CATTCACGGTTGACGGACATCAGGTGACGCTGGAATTCGCGCCGAACAGCATCCGCAACCCGTTCCAGCTTCCACGTTTC
GCATGTCCTTGA