Detailed information of component protein


Summary

Component ID T6CP015938
Component protein type TssK
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (448 a.a.); Nucleotide sequence (1344 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09205
Coordinate (Strand) 191158..192501 (-)
NCBI ID 512737846
RefSeq NZ_JZLI01000006
Uniprot ID R9VK06_9ENTR
KEGG ID enr:H650_00760
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 7e-137 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-447 MNKAEKVVWTEGMFLRPHHFQRAESYLQHHIREWGTLQRPYLWGYLDIELDDAMLRQGCIALSYASGLLPDGTFFSFHDARQAPTPLAIPDNINNERVVLALPARRGGRDEVIFSEEKDSLARYVTWESEVDDDNAMSVGPAAVQFGRLRLKLMLEKDLSAEWTAIGVAHVVEKRNDNHVRIDSRYIPPMLNAVNNPAIYAIINDLQSLLMQRSQQIGQRLRQPGRFNTSEMVEFTLLALINHHVGQVSHLKTLPMIHPEELWRSWLAFATELTTWTASRSPEETLPVYDHDDLAGCFGKLQLMLRNGLSLVMEEHAIQLPLTERTHGLNIATLPTTTMAREFGFVLAVKASVPGEILQTHFPAQMKVAPVTKIRDLVQLQLPGMKLRTMPVAPPQIPWHAGYNYFELEKGGELWNEMEKSGAFALHLAGEFPGLDMEFWAIRSPTE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 448 a.a.    

>T6CP015938 NZ_JZLI01000006:c192501-191158 [Kosakonia oryzae] [TssK]
MNKAEKVVWTEGMFLRPHHFQRAESYLQHHIREWGTLQRPYLWGYLDIELDDAMLRQGCIALSYASGLLPDGTFFSFHDA
RQAPTPLAIPDNINNERVVLALPARRGGRDEVIFSEEKDSLARYVTWESEVDDDNAMSVGPAAVQFGRLRLKLMLEKDLS
AEWTAIGVAHVVEKRNDNHVRIDSRYIPPMLNAVNNPAIYAIINDLQSLLMQRSQQIGQRLRQPGRFNTSEMVEFTLLAL
INHHVGQVSHLKTLPMIHPEELWRSWLAFATELTTWTASRSPEETLPVYDHDDLAGCFGKLQLMLRNGLSLVMEEHAIQL
PLTERTHGLNIATLPTTTMAREFGFVLAVKASVPGEILQTHFPAQMKVAPVTKIRDLVQLQLPGMKLRTMPVAPPQIPWH
AGYNYFELEKGGELWNEMEKSGAFALHLAGEFPGLDMEFWAIRSPTE*

  Nucleotide sequence: 1344 bp    

>T6CP015938 NZ_JZLI01000006:c192501-191158 [Kosakonia oryzae] [TssK]
ATGAACAAAGCAGAAAAGGTCGTGTGGACCGAAGGTATGTTTCTGCGCCCTCATCACTTTCAGCGAGCGGAAAGCTATCT
GCAACACCATATTCGCGAGTGGGGGACACTGCAGCGCCCGTATCTTTGGGGCTACCTTGATATCGAGCTCGACGATGCCA
TGCTGCGCCAGGGCTGTATTGCCCTGAGTTATGCCAGCGGTTTACTGCCGGATGGCACGTTCTTCTCATTCCACGATGCT
CGCCAGGCGCCCACACCGCTGGCTATCCCTGACAACATCAACAATGAGCGCGTGGTGCTGGCGCTGCCTGCCCGTCGCGG
CGGGCGTGATGAGGTGATCTTTAGCGAAGAGAAAGATTCGCTGGCGCGTTATGTCACCTGGGAAAGCGAAGTCGATGACG
ATAACGCCATGTCCGTCGGGCCGGCGGCGGTGCAGTTTGGCCGTCTGCGTCTGAAACTGATGCTGGAAAAAGATCTCTCG
GCAGAGTGGACGGCGATCGGTGTCGCGCATGTCGTAGAAAAACGTAACGATAACCACGTTCGAATTGATAGCCGTTATAT
TCCGCCGATGCTGAATGCGGTTAACAACCCGGCGATTTACGCCATTATCAACGATCTGCAAAGTTTGCTGATGCAGCGTA
GCCAGCAGATTGGCCAGCGTCTGCGCCAGCCGGGGCGTTTTAATACCTCTGAAATGGTGGAATTCACGCTGCTGGCCTTG
ATTAACCACCATGTCGGCCAGGTTTCCCATCTGAAAACGCTGCCGATGATCCACCCGGAAGAGTTGTGGCGCAGCTGGCT
GGCGTTTGCCACCGAGCTGACCACCTGGACCGCGTCACGCTCGCCGGAAGAGACGCTGCCGGTTTACGACCATGACGATC
TGGCCGGGTGTTTTGGCAAGTTACAACTGATGCTGCGCAATGGGTTGTCTCTGGTGATGGAAGAGCACGCCATCCAGTTG
CCGCTCACCGAACGCACGCACGGGTTGAATATCGCCACCTTGCCGACCACCACCATGGCGCGCGAGTTTGGTTTCGTGCT
GGCAGTGAAAGCCAGCGTCCCTGGCGAAATCCTGCAAACCCATTTCCCGGCCCAGATGAAAGTCGCGCCGGTCACCAAAA
TCCGCGACCTGGTGCAGTTGCAACTGCCGGGTATGAAGCTGCGCACCATGCCGGTCGCGCCGCCGCAAATTCCGTGGCAT
GCCGGTTACAACTATTTCGAACTGGAAAAGGGCGGCGAGCTGTGGAACGAAATGGAAAAATCGGGGGCTTTCGCGCTGCA
TCTGGCAGGTGAATTCCCGGGTCTTGATATGGAGTTTTGGGCCATCCGTAGCCCGACTGAATAA