Detailed information of component protein


Summary

Component ID T6CP015937
Component protein type TssL
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (413 a.a.); Nucleotide sequence (1239 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09200
Coordinate (Strand) 189902..191140 (-)
NCBI ID 512737847
RefSeq NZ_JZLI01000006
Uniprot ID R9VI37_9ENTR
KEGG ID enr:H650_00765
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 8.4e-69 21..223
OmpA PF00691.22 6.8e-14 290..388
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-199 MQEQQASGSDAALAGASGNNPLVAAANPLLNAIPQIRYSVSHDDQSGLRQHLIDEIRRFEVRCQQSGLAYEVIVGARYCLCTALDEAAALTPWGSRGVWSGSGLLVTFHNETWGGEKFFQLLARLSQNPREHIALLELINFCLLLGFEGRYRVMDNGRTQLETIKQRLWQMIRGVRGNYPPPLSPHPEDQPVMRKLWRP
Transmembrane helix 200-222 VIPLWACVGLAGFLACLFYIVLN
Inside 223-412 WRLGDSTNPVLAKIYQTQLPEAAIEQPVQNVQPVLNLRAFLRPEIQAGLVAVRDEADRSVVTLKGDGLFASGSTVARESYEPVIDRVAQAMNNVSGKILVVGFSDNVPIRSARFASNYELSLERARSVQSLLQKHLSQPARVKAEGRGEMNPIAPNNSAENRARNRRVEITLLVSPGNTAAELNGLPQGN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9467 - -


  Protein sequence: 413 a.a.    

>T6CP015937 NZ_JZLI01000006:c191140-189902 [Kosakonia oryzae] [TssL]
MQEQQASGSDAALAGASGNNPLVAAANPLLNAIPQIRYSVSHDDQSGLRQHLIDEIRRFEVRCQQSGLAYEVIVGARYCL
CTALDEAAALTPWGSRGVWSGSGLLVTFHNETWGGEKFFQLLARLSQNPREHIALLELINFCLLLGFEGRYRVMDNGRTQ
LETIKQRLWQMIRGVRGNYPPPLSPHPEDQPVMRKLWRPVIPLWACVGLAGFLACLFYIVLNWRLGDSTNPVLAKIYQTQ
LPEAAIEQPVQNVQPVLNLRAFLRPEIQAGLVAVRDEADRSVVTLKGDGLFASGSTVARESYEPVIDRVAQAMNNVSGKI
LVVGFSDNVPIRSARFASNYELSLERARSVQSLLQKHLSQPARVKAEGRGEMNPIAPNNSAENRARNRRVEITLLVSPGN
TAAELNGLPQGN*

  Nucleotide sequence: 1239 bp    

>T6CP015937 NZ_JZLI01000006:c191140-189902 [Kosakonia oryzae] [TssL]
ATGCAGGAACAACAAGCCTCCGGCAGCGATGCCGCTCTGGCAGGAGCAAGTGGCAACAATCCTTTGGTCGCGGCCGCCAA
CCCGCTACTTAACGCGATACCGCAGATCCGCTATTCCGTTTCTCATGATGATCAAAGCGGTCTGCGCCAGCACCTGATTG
ATGAAATTCGCCGTTTTGAAGTGCGCTGCCAGCAATCCGGGCTGGCCTACGAAGTGATCGTCGGCGCCCGTTACTGTTTA
TGCACCGCGCTGGATGAAGCGGCGGCGCTCACGCCGTGGGGAAGCCGTGGCGTCTGGTCCGGTAGCGGTCTGCTGGTGAC
GTTCCACAACGAAACCTGGGGCGGGGAGAAATTCTTCCAGCTGCTGGCACGCTTGTCGCAAAACCCGCGCGAACATATCG
CGCTGCTGGAACTGATCAACTTCTGCCTGTTACTCGGTTTTGAAGGACGTTACCGGGTGATGGACAACGGCCGCACGCAA
CTGGAAACCATCAAACAGCGCTTGTGGCAGATGATTCGCGGTGTGCGTGGCAACTATCCGCCGCCGCTGTCGCCGCACCC
GGAAGATCAACCGGTCATGCGCAAATTGTGGCGGCCGGTTATTCCGCTGTGGGCGTGTGTCGGGCTGGCGGGATTTCTCG
CCTGCCTGTTCTATATCGTGCTCAACTGGCGTCTGGGTGACAGCACCAACCCGGTGCTGGCGAAAATTTACCAAACCCAG
TTGCCGGAAGCGGCCATTGAGCAGCCGGTACAAAACGTGCAGCCGGTACTTAACCTGCGCGCGTTTCTGCGCCCGGAAAT
TCAGGCAGGCCTGGTGGCGGTGCGCGATGAAGCCGATCGCAGCGTGGTAACACTCAAAGGCGATGGGCTGTTTGCCTCGG
GATCGACGGTGGCACGCGAAAGCTATGAACCGGTTATCGATCGTGTTGCGCAGGCGATGAATAACGTCAGCGGCAAAATT
CTGGTGGTGGGTTTCAGTGACAACGTGCCGATCCGCAGTGCGCGTTTCGCCTCGAACTACGAGCTGTCGCTTGAGCGCGC
GCGTTCTGTGCAGTCGCTGCTGCAAAAACACCTGTCGCAACCGGCGCGTGTGAAAGCGGAAGGGCGAGGGGAGATGAACC
CGATAGCGCCGAACAACTCGGCTGAAAACCGCGCCCGTAACCGCCGCGTAGAGATTACTTTGCTGGTGTCGCCGGGAAAT
ACGGCCGCCGAGCTGAACGGATTGCCGCAAGGAAACTAA