Detailed information of component protein


Summary

Component ID T6CP015934
Component protein type TssA
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (338 a.a.); Nucleotide sequence (1014 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09185
Coordinate (Strand) 184533..185546 (-)
NCBI ID 780193711
RefSeq NZ_JZLI01000006
Uniprot ID UPI0005EEEFB9
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 5.7e-36 7..130
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-337 MTIESLLAPVSPEQPCGENLEYDADFQAMEQASLGKAEQQFGSTIIPAEPADWTRVEKLATGLLARTKDIRVMMALTHAWTRRRGLEGYADGLMLLGQALALYWDQLWPSLTDGGEFDPFYRINALAGLSDKSSLTTTLRQSTLLRSNGDELNVRDAQALLDGSKTECAGYPGGRVRLIDELTRGGQPGIEAICQIEGRLQTIRTWLLEQLGESGVPEMEQLLKTVGLIAGVSRANRTEEQQATEQTAPADSAPQPVVATPLAAHTDWRTAQVTTRADAQLMLEKVKQYFTQHEPSHPAPLMIDRVQRLIELDFMEIIRDLAPDGVNQLQNIFGRQD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9834 - -


  Protein sequence: 338 a.a.    

>T6CP015934 NZ_JZLI01000006:c185546-184533 [Kosakonia oryzae] [TssA]
MTIESLLAPVSPEQPCGENLEYDADFQAMEQASLGKAEQQFGSTIIPAEPADWTRVEKLATGLLARTKDIRVMMALTHAW
TRRRGLEGYADGLMLLGQALALYWDQLWPSLTDGGEFDPFYRINALAGLSDKSSLTTTLRQSTLLRSNGDELNVRDAQAL
LDGSKTECAGYPGGRVRLIDELTRGGQPGIEAICQIEGRLQTIRTWLLEQLGESGVPEMEQLLKTVGLIAGVSRANRTEE
QQATEQTAPADSAPQPVVATPLAAHTDWRTAQVTTRADAQLMLEKVKQYFTQHEPSHPAPLMIDRVQRLIELDFMEIIRD
LAPDGVNQLQNIFGRQD*

  Nucleotide sequence: 1014 bp    

>T6CP015934 NZ_JZLI01000006:c185546-184533 [Kosakonia oryzae] [TssA]
ATGACTATAGAATCGTTACTCGCTCCGGTCAGCCCGGAGCAGCCTTGCGGTGAGAATCTGGAGTACGACGCCGATTTCCA
GGCGATGGAGCAGGCGAGCCTCGGCAAAGCCGAGCAGCAGTTTGGCAGCACCATTATTCCCGCCGAACCGGCAGACTGGA
CGCGGGTGGAAAAACTGGCCACCGGGCTGCTGGCGCGCACCAAAGATATCCGCGTGATGATGGCGTTAACCCATGCGTGG
ACTCGACGTCGCGGGCTTGAAGGCTATGCTGATGGTTTAATGCTGTTAGGTCAGGCGCTGGCGCTGTACTGGGATCAACT
CTGGCCTTCGCTGACTGACGGCGGTGAATTCGACCCGTTTTATCGCATTAATGCGCTGGCGGGGTTAAGCGATAAATCTT
CGCTGACCACCACGCTGCGCCAGTCGACGCTGCTGCGCAGCAACGGTGATGAGCTAAACGTGCGCGACGCGCAGGCGTTG
CTTGACGGCAGCAAAACGGAATGTGCAGGCTATCCTGGCGGTCGGGTGCGTCTGATTGATGAACTCACGCGCGGCGGTCA
GCCTGGCATTGAGGCTATCTGCCAAATCGAAGGGCGTCTGCAAACGATCCGTACATGGTTGCTCGAACAACTGGGCGAAA
GCGGGGTGCCGGAAATGGAACAGTTACTCAAAACGGTCGGGTTAATCGCCGGCGTCAGCCGCGCTAACCGCACGGAAGAG
CAACAGGCGACAGAACAAACGGCACCTGCGGATAGCGCACCGCAACCGGTTGTCGCGACACCGCTTGCGGCGCATACCGA
CTGGCGAACCGCACAGGTCACCACGCGTGCCGATGCGCAACTGATGCTGGAAAAAGTGAAGCAGTATTTCACCCAGCACG
AGCCGAGCCACCCCGCGCCGTTGATGATTGACCGCGTACAGCGGCTAATCGAACTGGACTTTATGGAGATTATTCGCGAT
CTGGCGCCCGATGGCGTGAATCAACTGCAAAACATCTTTGGGCGTCAGGACTGA