Detailed information of component protein


Summary

Component ID T6CP015927
Component protein type TssG
T6SS ID (Type) T6SS01282 experimental (Type i3)
Strain Kosakonia oryzae strain KO348
Replicon chromosome
Sequence Protein sequence (348 a.a.); Nucleotide sequence (1044 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) UG97_RS09110
Coordinate (Strand) 169953..170996 (-)
NCBI ID 780193673
RefSeq NZ_JZLI01000006
Uniprot ID UPI0005EEB311
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 7.1e-102 29..330
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-347 MTETLSSAPVITRASALPEAFWQNVMATPWRYDLFTLLRRVDARGGERYPLGRAPLPRFEPLRIGQTPSLGFAPSTLSSVRQRENSSLYDVSILSFGLFGPNGPLPVHLTEYASERIAHHQDDSLSAFADLFHHRLALLFYRAWADAQPTVSLDRQDNKRFEQYIASLIGMGQPGQLEKGSLSPHARFALAGHLTRNGRDPEGLAKILRSYFNVPVTIVENVPQWMPLSERERARLQGGRHAPRLGQSAFLGEAVRDVCHKFRIEIGPLNVDTYRRFMPGEKWVTALRDWVRQYLGIEYQWAVKVILRSEDVAGATLGGAGRLGYSAWLGTQPRPQARGDLVFSPEG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9239 - -


  Protein sequence: 348 a.a.    

>T6CP015927 NZ_JZLI01000006:c170996-169953 [Kosakonia oryzae] [TssG]
MTETLSSAPVITRASALPEAFWQNVMATPWRYDLFTLLRRVDARGGERYPLGRAPLPRFEPLRIGQTPSLGFAPSTLSSV
RQRENSSLYDVSILSFGLFGPNGPLPVHLTEYASERIAHHQDDSLSAFADLFHHRLALLFYRAWADAQPTVSLDRQDNKR
FEQYIASLIGMGQPGQLEKGSLSPHARFALAGHLTRNGRDPEGLAKILRSYFNVPVTIVENVPQWMPLSERERARLQGGR
HAPRLGQSAFLGEAVRDVCHKFRIEIGPLNVDTYRRFMPGEKWVTALRDWVRQYLGIEYQWAVKVILRSEDVAGATLGGA
GRLGYSAWLGTQPRPQARGDLVFSPEG*

  Nucleotide sequence: 1044 bp    

>T6CP015927 NZ_JZLI01000006:c170996-169953 [Kosakonia oryzae] [TssG]
ATGACCGAAACGTTGAGCAGCGCGCCGGTCATTACGCGCGCCAGTGCGCTGCCGGAGGCATTCTGGCAAAACGTAATGGC
GACGCCGTGGCGCTACGATCTGTTTACGCTGCTGCGCCGCGTCGATGCGCGTGGCGGTGAGCGTTACCCGCTGGGTCGCG
CGCCGCTGCCGCGTTTTGAGCCGTTGCGCATTGGTCAAACCCCCTCACTTGGCTTTGCGCCGTCGACGCTGTCAAGCGTG
CGCCAACGCGAAAACTCGTCGCTGTATGACGTCTCGATTCTCAGTTTTGGCCTGTTTGGCCCCAACGGCCCGCTGCCGGT
TCACCTGACTGAATACGCCAGCGAACGTATCGCGCACCACCAGGATGACAGCCTGAGCGCCTTCGCCGATCTTTTTCATC
ACCGCCTGGCGCTGCTGTTTTACCGCGCCTGGGCCGATGCGCAGCCGACTGTTTCGCTGGATCGCCAGGATAACAAACGT
TTTGAGCAGTACATCGCCTCGCTGATCGGCATGGGGCAGCCAGGACAACTGGAAAAAGGCAGCTTAAGCCCGCACGCGCG
TTTTGCCCTTGCCGGGCATCTGACCCGCAACGGGCGCGACCCGGAAGGGCTGGCGAAGATCCTGCGCAGCTATTTCAACG
TGCCGGTCACCATTGTCGAAAACGTGCCGCAGTGGATGCCGCTCAGTGAACGTGAACGCGCGCGCTTACAGGGCGGGCGA
CACGCGCCGCGCCTCGGGCAATCGGCGTTTCTTGGCGAAGCTGTACGCGATGTGTGCCATAAGTTTCGCATCGAAATTGG
CCCGCTTAACGTCGATACCTACCGGCGCTTTATGCCGGGTGAAAAGTGGGTTACCGCGCTACGCGACTGGGTGCGCCAGT
ATCTGGGCATTGAGTACCAGTGGGCGGTGAAAGTGATTTTGCGCAGTGAAGATGTCGCTGGTGCCACGCTTGGTGGAGCC
GGGCGTCTGGGTTACAGCGCCTGGCTTGGTACACAGCCCAGGCCACAAGCGCGAGGAGATTTGGTTTTCAGCCCGGAGGG
GTAA